Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00842 ATGTCAAAAAAGAGGAGCAGACATCATAGAAGTTCAACATGTCCAACGTCTGCAATCAGCATGAACGACAACTTGTTAACAACATTTGTGCAAGATCCTGTCTCTCCTTTGGTCTATCACCTCCATAAACAACATGTGTATACCACAAAAATGAAATTAACTAGGTCTATGTCATTTCCTCTACCTGACCCCTTATCAAAAAGACAAAGTTTTGGGACTGTAGGGAACGCTTTTTCACCAAAAGGGAAAGGAAAATTATGTTTCGAAACCAAAACACCAAAGTCAGCTAATTTTGAATCCTCAAGAAAGTTTTACCTAAGGTCCTTGTCTCAATGTTTCAACGTAAATGAAGCAATGATTACAAGAGATGTTACTAGTTCTTCAGCTCAGGATCAAAGTCTGAACGAAATCAAACATTTTAAGAATCTGAAGCAGAAAATAGAGCATGTTATAGGAGAAAGTAGAAAAGAAAAGCTTCGAGTTGCTATGGATGCTATCATTGACAAACTTCCTCAAGGTCATGAGATATCGAGTGATTTGAAGAAGGAAGTTTTTAAGAAAATAACAGATTCTAATGTGAGTAGAGAAGATGAAACCTGTCATGGAAAATGTAATGAGATCAGTGGTAACGTTACTAATTCATTTGCCAAGCATCACTGGAACATCATAAGAAGAAAATTGTCTCTTGAAGAACCACTAGACAATTATTTTCGCTCCGATGACAAGGGCTTTAATGCAGAACAAAGTCATCCTCAATCTAAGCAGCTAAAATTAAGAACAGAAAAAGGACATTCACGATTGAAGATGTTGGTACAAAGGATGCTTTCGTTGCCTGATCTCAATTCCTTGTCCTTCCCTGATATTTCATCTTTGACTGAACCAAAGGCAAAAGTAGCTTCTGGCGATGCAACATTGAGTTCAGACAACATTTTCCATCAGAAAAGAAGGTCTAGCCTTAATTTACATTCAAAAGTTCAGCTTCAACCAGAGACACCTGTAGAAGATTTTATTCAAAAACACCCTCACAGTGTGGATGAAAATCATCAAGAGATTAGTAATATTGTTGAACGAGGATCAGAGTGCAGTAGTGAGATTAATGACAAGGCTAGTGTGACAACTGATGATTTCGGACATAGTTGTTTTAAAAGTGGTGACACCTCTAATGACCAAGAAATGATTGAGCCAATAAAAGAAAACATGACTGCAATAGAAGAATCAGTGGATTCAAAATTGATTACGGAACCCGGCAATGAACTAGAAAACATTATTGAGAAACAAGAGGCTACAATCACAGATTCAGTTAAAGTGAAAGAAAGCACAGAGAATGCTGAAAAAGTGGAGAATCAAAGCAAGCACATGAACTATGACATTACTCTTTCCCATATCCCCATGAAAGACAAAGCTGACTTTAACTACGTGAAATTTGTACTTGAGATATCTGGACTCACTGGTAAAGAGTGCCTTTCAGCATGGCATTCAAGTGAGCACCCAGTTGATCCACTACTCTATGAAGAAATGGAGAATGACCTTGATTTCTGCAGCTATGGTGGAAGTGGCCAGTGCAATCACCATGTGTTTTTTGACCTAATCAATGAGACATTGTTGGAACTTTCTGGGAGGTGTTACTGTTGTTGTTCCATACCCTTTTCATCATCTCATCCAATGCCAAAAGGGTGTCACACTCTTTATCAAGTGTGGACTGGTATGAACAAATCCTTGTGCCTTAGATCCAAAACTGGGCTAACCATAGATGACCATGTAAGTCGTGATCTAGAAAGACGTGATGGGTGGGTGAACCCTCAATTGTATGCACAGTGTGTCAGTTTGGAGCTTGAAGACTTGATTTTGCATGATCTTCTGGAAGAAATATCATGTGACTTAGCAACATCCATTTAA 1896 0.3808 MSKKRSRHHRSSTCPTSAISMNDNLLTTFVQDPVSPLVYHLHKQHVYTTKMKLTRSMSFPLPDPLSKRQSFGTVGNAFSPKGKGKLCFETKTPKSANFESSRKFYLRSLSQCFNVNEAMITRDVTSSSAQDQSLNEIKHFKNLKQKIEHVIGESRKEKLRVAMDAIIDKLPQGHEISSDLKKEVFKKITDSNVSREDETCHGKCNEISGNVTNSFAKHHWNIIRRKLSLEEPLDNYFRSDDKGFNAEQSHPQSKQLKLRTEKGHSRLKMLVQRMLSLPDLNSLSFPDISSLTEPKAKVASGDATLSSDNIFHQKRRSSLNLHSKVQLQPETPVEDFIQKHPHSVDENHQEISNIVERGSECSSEINDKASVTTDDFGHSCFKSGDTSNDQEMIEPIKENMTAIEESVDSKLITEPGNELENIIEKQEATITDSVKVKESTENAEKVENQSKHMNYDITLSHIPMKDKADFNYVKFVLEISGLTGKECLSAWHSSEHPVDPLLYEEMENDLDFCSYGGSGQCNHHVFFDLINETLLELSGRCYCCCSIPFSSSHPMPKGCHTLYQVWTGMNKSLCLRSKTGLTIDDHVSRDLERRDGWVNPQLYAQCVSLELEDLILHDLLEEISCDLATSI 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00842 631 PANTHER PROTEIN TRM32 17 627 IPR044257 -
Viun10g00842 631 Pfam Domain of unknown function (DUF4378) 469 622 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00842 Viun-Chr10 10733230 10736815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00842 461 616 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 40.936 7.09e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00842 - - gmx:121174644 820.076