Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00833 ATGGATGGAAAAAGAAGCTCTGCGGAAAGCGAAGAACAGAGCAAACAGAAGAGAAAAGCAGAGACGGTGCCGTTTCGCAAGCTGTTCGCGTTTGCGGACTGTGCAGACATTACGTTGATGGTGGTTGGAAGCGTTGGCGCCATCGGAAACGGTTTGGGATTTCCTCTGATGACATTACTTTTTGGTGAAATAATCGACGCCTTCGGAGCTAACCAGAACAGTCCCGGCATAGTAGAAAAAGTGTCTCAGGTTTCTCTCAAATTTGTGTACTTGGCATTAGGATCTGGGGTGGCAGCTTTCCTTCAGGTGACTTGCTGGATGGTAACCGGGGAAAGACAGGCTGCGAGAATTAGGGGACTGTATTTGAAAACTATATTAAGACAAGACGTTGCTTTCTTTGACAAGGAAACAAACACTGGTGAAGTGATTGGAAGAATATCAGGTGATACTGTTCTCATTCAAGATGCCATGGGAGAGAAGGTTGGGAAATTTGTGCAGTTGATAGCAACATTCGTAGGGGGCTTCGCGATAGCCTTTGTGAAAGGGTGGCTTCTTACACTTGTCATGTTGTGCCTTTTTCCACTCCTTGTTCTATCAGGTGCTGCTATGGCCATCATGCAAGGTAGGATGGCTTCTAGAGGTCAAGCTGCCTATGCAAAAGCTGCACACATCGTTCAGCAGACAATTGCCTCAATAAGAACAGTTGCATCTTTTACTGGGGAAAAACAAGCACTGTCTGATTACAGAAAATTTCTTGTAGAAGCTTACGTAACTGGCGTTCATGAAGGTTCTGTTGCTGGCGTGGCCCTTGGCACAGTTATGCTTCTTGTTTTCAGTGGTTATGCTTTAGCAGTGTGGTTTGGCGCAAAGATGATAATCGACAATGGAGAAAAATATAATGGGGGCACGGTGCTCAATGTGATTGCTTCTTTATTAACTGCTTCAATGTCTCTTGGGGAGGCATCCCCTATCATGAGTGCTTTTGCTGCGGGTCAAGCTGCTGCATACAAAATGTTTGAAACAATTGCGAGGAAACCAGAGATAGATGCTTATGATCCAAATGGGAAAATATTAGAGGATATTGAAGGTGAACTAGAGTTGAGGGATGTTTGTTTCAGTTACCCAGCGAGGCCTGAGGAGTTGATTCTCAATAGGTTTTCTCTTTATATATCTAGTGGCACAAGTGTTGCACTGGTGGGACAAAGCGGGAGTGGAAAATCCACGGTTATTAGTTTGATAGAGAGATTCTATGATCCTCAAGAAGGTCAAGTTCTTATTGATGGCATTAGCCTGAAAGAGTTTCAGCTTAGGTGGATGAGGGGGAAAATTGGCCTTGTTAATCAGGAGCCAGTCTTGTTTGCATCAAGCATTAAGGATAACATTGCATATGGAAAGGAGGGTGCCACAATTGAAGAGATAAGATCAGCATCTGAACTTGCAAATGCTGCTAAATTCATTGATAAACTGCCACAGGGATTGAACACAATGGTTGGTGAACAAGGAACTCAACTCTCTGGTGGACAAAAGCAGCGCATTGCCATAGCAAGAGCAATCCTAAAGGATCCAAGAATTTTACTTCTGGACGAAGCTACAAGTGCCCTTGATGCAGAGTCTGAAAGAACAGTGCAAGAGGCTCTGGACAGGGTAATGGTTAATCGAACTACTGTTATTGTGGCACATCGGTTGAGCACAGTGAGGAATGCTGATTCGATTGTTGTAATTCATAGAGGGAAGGTGGTTGAAAAAGGAACACACTCAGAACTGGTCAAGGATCTCGAGGGAGCTTACACTCAATTGATACGTTTACAAGAAGTAAACAAAGAATCAGAAGAAACTACAAGCAATCACAGCAAGAGCGAACTTTCTACGGAATCCTCTACACAGTTAACCAAAAAAAGATCTACTAGGAGATCTATTAGCAGGGGATCATCTTTGGGGAGTAGTAGCCGTCACTCATTTTCTCTTTCTGGTTTACCCAAAGGTGTTAGTGTCCCTGATACTGAAAGTGAAGACGCATTACTCGAAACACAAGCACAAGAGGTTTCACTCCGCCGGCTTGCTTCCCTCAACAAACCAGAGGTTCCAGTGCTTCTGATTGGATGTCTAGCTGCCATAGCAAATGGTGTTATACTTCCCATATTTGGGGTGTTGATTTCCATTGCGGTCAAAATATTTTACGAACCAGTTGATGAGATGAAAAAGGACTCCAAATTTTGGGCACTCATGTTCGTGGTTCTTGGTCTTGCATCATTTTTGGTAATTCCAGCAAGAGCATACTTTTTCTCTGTGGCTGGATGCAAGTTGATCCAACGTATCAGGGTAATATGTTTTGAGAAAGTGGTGAACATGGAGGTTGGTTGGTTTGATGAGCCTAGCAACTCAAGTGGTGCCATAAGCGCAAGGCTCTCAGCAATTGCTGCTTCTGTGCGCGCTCTTGTTGGTGATGCACTGGGCCTGTTGGTCCAAAATTTAACATGTGCCTTGGCAGGTTTGATTATTGCTTTCATTGCATGCTGGCAATTGGCTTTGATTATTCTTGTCTTGATTCCCCTTATTGGTGCAAATGGCTATGTTCAAACGAAATTCATGAAGGGGTTCAGCAAAGACGCAAAGATGATGTACGAGGGAGCAAGCCAAGTTGCTAAGGATGCAGTTGGAAATATAAGAACAGTAGCTTCTTTCTGTGCAGAAGATAAGGTTATGGAATTGTATAGGAAGAAATGTGAAGACCCCATGAAAACAGGGATATGGCAAGGGTTGATCAGTGGATTAGGATTTGGGGTTTCATTTTTCTTACTATTTTGTGTTTATGCAACTAGTTTCTATGCAGGAGCTAGACTAGTGGCCGCTGGAGAAACAACATTCTCCAAAGTTTTTCGGGTTTTCTTTGCTTTAACTATGGCAGCTATTGGGGTTTCCCAGTTTAGCACAATTTCTCCTGATTCTGGCAAAGCCAAGTCTGCAACTGCTGCCATATTTGGAATAATCGATAAGAAGTCAGAGATAGATCCAAGTGATGAGACTGGTACCACATTGGATATAGTTGAGGGAGAAATTGAGCTTCGTCATGTGAGTTTCAACTACCCATCAAGGCCAAAGATACAGATTTTTCGAGACCTTAACTTGATTTTCCATTCTGGCAAGACAGTGGCCCTTGTTGGTGAAAGTGGATGTGGAAAATCAACAGTGATTTCGTTGTTGCAGAGATTTTATGTTCCCAATTCAGGTGAAATCACACTTGATGGTGTACCAATTGGGGAGTTACAATTGAAGTGGTTTCGGCAGCAAATGGGTTTGGTAAGCCAAGAGCCGGTATTGTTCAATGACACTATTCGTGGTAACATTGCATATGGGAAAGGAGGTGAAGCAAGTGAAGCAGAAATCATAGCAGCCGCAGAACAAGCTAATGCCCATGTATTTATCAGTGCCTTACAACAGAGTTATGACACCGTAGTGGGAGAAAGGGGAACCCAGTTATCTGGGGGACAGAAGCAAAGGGTAGCCATTGCCCGTGCTTTGATTAAAAGTCCAAAGATATTGCTATTAGACGAAGCCACAAGTGCATTAGACGCTGAGTCAGAGAGAGTTGTTCAGGATGCATTGGACAAAGTCATGGTGAACAGAACCACTGTGGTTGTGGCACATCGCCTATCTGCAATAAAAAATGCAGATTTGATTGCTGTTGTTAAAGATGGACTCATCGTGGAGAAGGGAAGCCATGAAACACTCGTTAAAGTCAAGGATGGGTTTTACGCTTCCTTAGTCCAACTTCACTCAAATGCTTCCAAAACTAGAGTTCCCTGA 3804 0.4343 MDGKRSSAESEEQSKQKRKAETVPFRKLFAFADCADITLMVVGSVGAIGNGLGFPLMTLLFGEIIDAFGANQNSPGIVEKVSQVSLKFVYLALGSGVAAFLQVTCWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRISGDTVLIQDAMGEKVGKFVQLIATFVGGFAIAFVKGWLLTLVMLCLFPLLVLSGAAMAIMQGRMASRGQAAYAKAAHIVQQTIASIRTVASFTGEKQALSDYRKFLVEAYVTGVHEGSVAGVALGTVMLLVFSGYALAVWFGAKMIIDNGEKYNGGTVLNVIASLLTASMSLGEASPIMSAFAAGQAAAYKMFETIARKPEIDAYDPNGKILEDIEGELELRDVCFSYPARPEELILNRFSLYISSGTSVALVGQSGSGKSTVISLIERFYDPQEGQVLIDGISLKEFQLRWMRGKIGLVNQEPVLFASSIKDNIAYGKEGATIEEIRSASELANAAKFIDKLPQGLNTMVGEQGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERTVQEALDRVMVNRTTVIVAHRLSTVRNADSIVVIHRGKVVEKGTHSELVKDLEGAYTQLIRLQEVNKESEETTSNHSKSELSTESSTQLTKKRSTRRSISRGSSLGSSSRHSFSLSGLPKGVSVPDTESEDALLETQAQEVSLRRLASLNKPEVPVLLIGCLAAIANGVILPIFGVLISIAVKIFYEPVDEMKKDSKFWALMFVVLGLASFLVIPARAYFFSVAGCKLIQRIRVICFEKVVNMEVGWFDEPSNSSGAISARLSAIAASVRALVGDALGLLVQNLTCALAGLIIAFIACWQLALIILVLIPLIGANGYVQTKFMKGFSKDAKMMYEGASQVAKDAVGNIRTVASFCAEDKVMELYRKKCEDPMKTGIWQGLISGLGFGVSFFLLFCVYATSFYAGARLVAAGETTFSKVFRVFFALTMAAIGVSQFSTISPDSGKAKSATAAIFGIIDKKSEIDPSDETGTTLDIVEGEIELRHVSFNYPSRPKIQIFRDLNLIFHSGKTVALVGESGCGKSTVISLLQRFYVPNSGEITLDGVPIGELQLKWFRQQMGLVSQEPVLFNDTIRGNIAYGKGGEASEAEIIAAAEQANAHVFISALQQSYDTVVGERGTQLSGGQKQRVAIARALIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSAIKNADLIAVVKDGLIVEKGSHETLVKVKDGFYASLVQLHSNASKTRVP 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00833 1267 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 698 984 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g00833 1267 FunFam ABC transporter B family member 9 27 361 - -
Viun10g00833 1267 Pfam ABC transporter 383 532 IPR003439 GO:0005524
Viun10g00833 1267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1019 1256 IPR003439 GO:0005524
Viun10g00833 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Viun10g00833 1267 Gene3D ABC transporter type 1, transmembrane domain 27 622 IPR036640 GO:0005524|GO:0016020
Viun10g00833 1267 CDD ABC_MTABC3_MDL1_MDL2 1019 1257 - -
Viun10g00833 1267 Gene3D - 1009 1259 IPR027417 -
Viun10g00833 1267 Gene3D - 355 604 IPR027417 -
Viun10g00833 1267 Gene3D ABC transporter type 1, transmembrane domain 677 985 IPR036640 GO:0005524|GO:0016020
Viun10g00833 1267 FunFam ABC transporter B family member 1 1009 1259 - -
Viun10g00833 1267 FunFam ABC transporter B family member 1 355 604 - -
Viun10g00833 1267 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Viun10g00833 1267 ProSitePatterns ABC transporters family signature. 1159 1173 IPR017871 GO:0005524|GO:0016887
Viun10g00833 1267 SMART AAA_5 392 578 IPR003593 GO:0016887
Viun10g00833 1267 SMART AAA_5 1046 1240 IPR003593 GO:0016887
Viun10g00833 1267 PANTHER ABC TRANSPORTER B FAMILY 4 605 IPR039421 -
Viun10g00833 1267 SUPERFAMILY ABC transporter transmembrane region 684 1004 IPR036640 GO:0005524|GO:0016020
Viun10g00833 1267 Pfam ABC transporter transmembrane region 43 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g00833 1267 Pfam ABC transporter transmembrane region 697 969 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g00833 1267 MobiDBLite consensus disorder prediction 606 666 - -
Viun10g00833 1267 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g00833 1267 MobiDBLite consensus disorder prediction 618 656 - -
Viun10g00833 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1257 IPR027417 -
Viun10g00833 1267 Gene3D ABC transporter type 1, transmembrane domain 986 1263 IPR036640 GO:0005524|GO:0016020
Viun10g00833 1267 Pfam ABC transporter 1038 1187 IPR003439 GO:0005524
Viun10g00833 1267 SUPERFAMILY ABC transporter transmembrane region 21 349 IPR036640 GO:0005524|GO:0016020
Viun10g00833 1267 CDD ABC_MTABC3_MDL1_MDL2 366 603 - -
Viun10g00833 1267 FunFam ABC transporter B family member 1 677 985 - -
Viun10g00833 1267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Viun10g00833 1267 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 326 - -
Viun10g00833 1267 CDD ABC_6TM_Pgp_ABCB1_D2_like 687 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00833 Viun-Chr10 10479541 10493573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00833 15 1258 Calmodulin-binding Proteins AT2G36910 44.559 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00833 K05658 - gmx:100800034 1900.18