Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun10g00824 | ATCACTTCACTCTCTCAGAACGTTCCCTCACGTCTTCGTTCGCTCTCCGTTTCTCCTTTCTCCTTTCTCCTCTTCGTTTCCCCTCTTTCGTTTCACCTCTTTCTCCTTTCTCCTTCCTTCGCCTCCATTTGCACCTCCATTTGCGCCTCAGTCCACGATTGTCGCCGTTCTCATTTGCTCGATTGGACGCAAGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACAGTCCCGGAAAGTGGAAGAACATTCTCAAAGATCCCCAATTCGCCCCTTTTCTCACTTCTCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAATAACGGTTCTCAAGGCTCCAAAGACAAACCTAGGGTTCCCAAGCTCAAGGCTCTTCCTCCTCCTCCACCTCCTACTTCTGCCACCTCCTCCACCACCACCACCGCTCCTCAAAACGCCCCTCCTACTCCTCTAAACGCACAGGTCGAGGTTGCTGCCCTTGATTCTTCTCTGAATGACCAAGATGTCAAAAAACCCCCGAGGTATAATGCAATGGTTTTTGAAGCTTTATCAGCACTAAAAGATAATAATGGATCTGATCTAAATGCCATTGTTAGTTTCATCGAGCAAAAACATCAAGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGATGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGCACCAGATATTGAAAGTTGTGTGTCATCTCCGCATGAAATACTAGGATCAAGTGGTGGAAGCAAAACACCTTAG | 783 | 0.47 | ITSLSQNVPSRLRSLSVSPFSFLLFVSPLSFHLFLLSPSFASICTSICASVHDCRRSHLLDWTQDEEDALIAGVEKHSPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVNNGSQGSKDKPRVPKLKALPPPPPPTSATSSTTTTAPQNAPPTPLNAQVEVAALDSSLNDQDVKKPPRYNAMVFEALSALKDNNGSDLNAIVSFIEQKHQVPQNFRRALSTRLMRLVSQGKLEKAPDIESCVSSPHEILGSSGGSKTP | 260 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun10g00824 | 260 | PANTHER | SINGLE MYB HISTONE 4 | 62 | 238 | IPR044597 | GO:0003691 | |
| Viun10g00824 | 260 | Pfam | linker histone H1 and H5 family | 179 | 236 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Viun10g00824 | 260 | SMART | h15plus2 | 175 | 238 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Viun10g00824 | 260 | ProSiteProfiles | Myb-like domain profile. | 62 | 111 | IPR001005 | - | |
| Viun10g00824 | 260 | SMART | sant | 58 | 113 | IPR001005 | - | |
| Viun10g00824 | 260 | Pfam | Myb-like DNA-binding domain | 61 | 110 | IPR001005 | - | |
| Viun10g00824 | 260 | FunFam | Telomere repeat-binding factor 1 | 58 | 112 | - | - | |
| Viun10g00824 | 260 | Gene3D | - | 174 | 246 | IPR036388 | - | |
| Viun10g00824 | 260 | Gene3D | - | 62 | 133 | - | - | |
| Viun10g00824 | 260 | FunFam | Telomere repeat-binding factor 1 | 62 | 141 | - | - | |
| Viun10g00824 | 260 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 177 | 253 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Viun10g00824 | 260 | SUPERFAMILY | Homeodomain-like | 60 | 112 | IPR009057 | - | |
| Viun10g00824 | 260 | MobiDBLite | consensus disorder prediction | 108 | 156 | - | - | |
| Viun10g00824 | 260 | CDD | SANT_TRF | 62 | 110 | - | - | |
| Viun10g00824 | 260 | CDD | H15 | 179 | 236 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Viun10g00824 | 260 | MobiDBLite | consensus disorder prediction | 141 | 156 | - | - | |
| Viun10g00824 | 260 | SUPERFAMILY | "Winged helix" DNA-binding domain | 178 | 237 | IPR036390 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun10g00824 | Viun-Chr10 | 10141628 | 10143758 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun10g00824 | 60 | 236 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 50.562 | 9.80e-51 | 166 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Viun10g00824 | Linker_histone | 6.7e-11 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun10g00824 | K09422 | - | gmx:780537 | 238.81 |