Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00818 ATGGTTTTTACTTCCATCCCAGCTTCTTATTTTGATGCATCCAACTGGCAGCAACAGCAACCAAACAACCAACCCGGAGGCAGTGGTTCCACCTCGCGGCAGCTGCTTCCACCACCGCCACCGCCAGCGCCACCGCTTCCTGCTGCAATGCAGTCTCATGGAGAGGGTGCAACCAGACCAGGATCCATGGCTGATAGGGCAAGGATGGCCAACATGCCAATGCCAGAGGTTGCACTCAAGTGTCCACGCTGCGAATCCACCAACACCAAATTTTGCTACTTCAACAACTACAGTCTCTCTCAGCCGCGCCACTTCTGCAAGACCTGCAGAAGGTACTGGACCAGAGGCGGCGCCCTAAGGAGCGTCCCAGTCGGCGGAGGCTGCAGGAGGAACAAGCGGACCAAAGGTACCGGCGGCGGTGGCGGCTCCAACTCTCCGGCAAGCTCTGACCGCCAGACAGGAAGTGTGAATTCCACCAACTCGGTATCTTCCAAGAATGAGAGAATAGGACTTGCACCCCAAATTCCACCCCTCAGATTCATGCCTCCACTGCATCAACTTGGTGACTTTGGAGATGGAGACATTGGCCTAAACTATGGCCTCAGTTATGCCCCAATGGGAGGGGTAGAGGACTTAAGTTATCAAATTGGAGCAAGTGCTTTTGGTGGTGGTGGTGGTGGTGGTGGTGCCACTTCAATCTTCTCTGCACCTAGTTTGGAACAATGGAGAATGCCACAACAGTTTCCCCTCTTAGCTTCCATGGAAGGTTCATCACCAGCTTCTAATTTATACCCTTTTGAAGGAAGTGCAGAGGTGAGTGGATATATGAGGCCAAAGGTTTCAACTTCTGGGATCATGACGCAGCTAGCTTCAGTGAAAATGGAAGAAAGTAGGGAACCTAACTCGTCAACACTTTTCTTGGGAAACTATAATCCAGTGAATGAACAATATTGGCCCAGTGCTACTTCTGCATCTTGGACAGATATTTCTGGGTTTAGCTCCTCTTTCACTGCAAGCAACCATCTATAG 1029 0.5121 MVFTSIPASYFDASNWQQQQPNNQPGGSGSTSRQLLPPPPPPAPPLPAAMQSHGEGATRPGSMADRARMANMPMPEVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRTKGTGGGGGSNSPASSDRQTGSVNSTNSVSSKNERIGLAPQIPPLRFMPPLHQLGDFGDGDIGLNYGLSYAPMGGVEDLSYQIGASAFGGGGGGGGATSIFSAPSLEQWRMPQQFPLLASMEGSSPASNLYPFEGSAEVSGYMRPKVSTSGIMTQLASVKMEESREPNSSTLFLGNYNPVNEQYWPSATSASWTDISGFSSSFTASNHL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00818 342 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677|GO:0006355
Viun10g00818 342 MobiDBLite consensus disorder prediction 13 33 - -
Viun10g00818 342 Pfam Dof domain, zinc finger 78 133 IPR003851 GO:0003677|GO:0006355
Viun10g00818 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 55 175 IPR045174 GO:0003700|GO:0006355
Viun10g00818 342 MobiDBLite consensus disorder prediction 123 168 - -
Viun10g00818 342 MobiDBLite consensus disorder prediction 13 62 - -
Viun10g00818 342 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677|GO:0006355
Viun10g00818 342 MobiDBLite consensus disorder prediction 137 168 - -
Viun10g00818 342 MobiDBLite consensus disorder prediction 34 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00818 Viun-Chr10 9796071 9797902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00818 1 335 C2C2-Dof Transcription Factor Family AT2G37590 38.162 2.73e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun10g00818 zf-Dof 7.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00818 - - pvu:PHAVU_010G013500g 545.428