LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g00780	ATGGCACAGGCAGTGGGGCGGAACAGGGTGGTCGGAGAGTACGTGGTGGGGAGGCAAATCGGCGCGGGGTCGTTCTCGGTGGTGTGGCACGGAAGGCACAAGGTACACGGAACCGAGGTGGCAATAAAGGAGATCGCCACGCTTCGCCTCAATAAGAAGTTGCAGGAGAGCCTCATGTCCGAGATTTTCATCTTGAAGCGGATTAACCACCCTAACATAATCTGTTTGCACGATATCATTCAGGTTCCTGGGAAGATACATCTTGTGTTAGAATACTGTAAAGGGGGAGATCTGTCCTTGTACATTCAACGCCATGGAAGGGTACCAGAGGCAACTGCAAAGCATTTCATGCAGCAGCTGGCTGCTGGTCTACTAGTTCTTCGAGATAATAACCTTATTCATCGAGACCTGAAACCACAGAACCTTCTTCTCTCCCAGAATGATGAGAAGTCAGTGCTGAAGATTGCTGACTTTGGATTTGCAAGATCTCTGCAACCTAGGGGCCTTGCGGAAACCTTGTGTGGTTCACCACTCTATATGGCTCCAGAAATCATGCAACTGCAGAAGTATGACGCTAAGGCAGATCTCTGGAGTGTTGGTGCAATCTTATTTCAGCTGGTTACTGGGAGAACACCTTTTACTGGAAACAATCAAATACAGTTACTACAGAATATTTTGAAATCGACAGAATTGCAGTTTCCATCTGATATCCCAAGTCTGAGTTTTGAATGCAAAGATTTGTGTCAGAAATTGCTACGCCGGAATCCAGTGGAACGTCTAACTTTCGAAGAATTTTTTAACCACCCATTTCTTTCTCAGAAGCAAAGAGAACAGGATGATGAGCCATTGAGAAGTTCTTCAAGGCTGGTTGGTGGGTTCTTTTCTACAGTATCTGACCCTTTGAGAAGAACTGAGGAAAATTACCAAGAAGATTGTTTGCCTTTCATCCTAGATGACGACTCTGGTGGCCCTGAGGGGAGTCCATCCTTTTCAAGAAAAAAGTCCTCAATAAAGTCCACCTATGGATTTGATCTAAATTCTAAACTAGATAAAGCAGAATCAACATCTCCTATCTCTAATAACATAAATTCTAATTCTGCATTTCGTACTATGACACAAAGATCTCAAAACACTAATAGGAGATTGGACAACCATAACATTTCAAGAGATCTCACTGATCCGCTAGAATCTCCAGAACAGATGTTCGCAAATCCTTATCCAAAAGTTACGGATTCCCTGGAGAATATTGATCAAGAATATGTTCTGGTGCCAGGGCCCCCTATAGATGTTTCATCTTCGGTGGGTGCTTCCAGGCCCAGCCATACCCAATATAGGTCTGGTAGTTTACCTCAAGAGTCTTCTAGTGCAATCACCAGACCAAGTGCTCCAATGCCAATAGTTGGTGCACATACAAATAGCATGTACCAAGTTGGAAGTTCAGGTAGCCAGGACTCTGCCCCTGGGACTTCGCTTGGATCAATGGATATAAGTGATGAACAGCCATCAGCTCACTGCATGACCAGGGTAAAATCATTGCAACAGTGTGCATCTGCCATCACCGAGTTAGTTAATGAGAAGATGGAGGCAGGAAAGCATCTGGAAGCATTTTCTATTCAGCTTGTAATTCTTGCAATCTGGAAGCAAGCACTGCACATATGCCATACACAAGCTGCCTCAGCCATGGAAGGAAGTCCAAATCAAGAAACTTCAAGATATAGAAGGAGTGCCAGTAGGAAGCATGGCAGTCCTGATTCAGAAGAATGCCTTGAGGGAAACACCCTATGGCCGAAGGATATATTATCTAAAATTGAAAGTGAATTTTTGAGGGAATTTGAGCATGCTGAAGAGCTTGCCAAGACCATTGAGCCTGGAAACACCGAGATGCCAGATGCAATGGAGACAATATTTCAATCTGCTCTTGCTTTTGGAAGGCATGGGGGTGTAGAAGAACTCATGGGTGACATGGAAAGTGCAGCTGCATTGTATTCAAAAGCTGTTCGTCTGTTAGTTTTTCTTCTAGTGGAAGGACCATCCCTGATTCTTAATCCTCCCTTTTCGCTGACAAACTCAGATCGTTACAGACTTCGAAATTACATTGATATTCTTAATAACAGACAAGGTTATTCAAGGTCCCAGCGAATGGCACTTCTGAAATGTGATGACAATCAAGGTATCCTTAAGGAAAAATTTTAG	2193	0.4387	MAQAVGRNRVVGEYVVGRQIGAGSFSVVWHGRHKVHGTEVAIKEIATLRLNKKLQESLMSEIFILKRINHPNIICLHDIIQVPGKIHLVLEYCKGGDLSLYIQRHGRVPEATAKHFMQQLAAGLLVLRDNNLIHRDLKPQNLLLSQNDEKSVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGRTPFTGNNQIQLLQNILKSTELQFPSDIPSLSFECKDLCQKLLRRNPVERLTFEEFFNHPFLSQKQREQDDEPLRSSSRLVGGFFSTVSDPLRRTEENYQEDCLPFILDDDSGGPEGSPSFSRKKSSIKSTYGFDLNSKLDKAESTSPISNNINSNSAFRTMTQRSQNTNRRLDNHNISRDLTDPLESPEQMFANPYPKVTDSLENIDQEYVLVPGPPIDVSSSVGASRPSHTQYRSGSLPQESSSAITRPSAPMPIVGAHTNSMYQVGSSGSQDSAPGTSLGSMDISDEQPSAHCMTRVKSLQQCASAITELVNEKMEAGKHLEAFSIQLVILAIWKQALHICHTQAASAMEGSPNQETSRYRRSASRKHGSPDSEECLEGNTLWPKDILSKIESEFLREFEHAEELAKTIEPGNTEMPDAMETIFQSALAFGRHGGVEELMGDMESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNSDRYRLRNYIDILNNRQGYSRSQRMALLKCDDNQGILKEKF	730

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g00780	730	MobiDBLite	consensus disorder prediction	558	590	-	-
	Viun10g00780	730	SMART	serkin_6	14	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun10g00780	730	MobiDBLite	consensus disorder prediction	433	460	-	-
	Viun10g00780	730	ProSitePatterns	Protein kinases ATP-binding region signature.	20	43	IPR017441	GO:0005524
	Viun10g00780	730	MobiDBLite	consensus disorder prediction	352	382	-	-
	Viun10g00780	730	MobiDBLite	consensus disorder prediction	572	586	-	-
	Viun10g00780	730	MobiDBLite	consensus disorder prediction	352	403	-	-
	Viun10g00780	730	Gene3D	Transferase(Phosphotransferase) domain 1	5	308	-	-
	Viun10g00780	730	CDD	STKc_ATG1_ULK_like	20	270	-	-
	Viun10g00780	730	Pfam	Protein kinase domain	14	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun10g00780	730	MobiDBLite	consensus disorder prediction	431	460	-	-
	Viun10g00780	730	ProSiteProfiles	Protein kinase domain profile.	14	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun10g00780	730	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	132	144	IPR008271	GO:0004672\|GO:0006468
	Viun10g00780	730	SUPERFAMILY	Protein kinase-like (PK-like)	10	450	IPR011009	-
	Viun10g00780	730	FunFam	Aurora kinase A	7	96	-	-
	Viun10g00780	730	FunFam	Serine/threonine-protein kinase ATG1	6	311	-	-
	Viun10g00780	730	PANTHER	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	3	639	IPR045269	GO:0004674\|GO:0006914

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g00780	Viun-Chr10	8747563	8755471	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun10g00780	10	281	CBL-interacting serine-threonine protein kinases	AT2G30360	36.879	5.10e-53	187

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-3	Viun10g00780		Pkinase	2.1e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g00780	K08269		-	gmx:100791596	1306.58