Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00779 ATGGCACAGGCAGTGGGGCGGAACAGGGTGGTCGGAGAGTACGTGGTGGGGAGGCAAATCGGCGCGGGGTCGTTCTCGGTGGTGTGGCACGGAAGGCACAAGGTACACGGAACCGAGGTGGCAATAAAGGAGATCGCCACGCTTCGCCTCAATAAGAAGTTGCAGGAGAGCCTCATGTCCGAGATTTTCATCTTGAAGCGGATTAACCACCCTAACATAATCTGTTTGCACGATATCATTCAGGTTCCTGGGAAGATACATCTTGTGTTAGAATACTGTAAAGGGGGAGATCTGTCCTTGTACATTCAACGCCATGGAAGGGTACCAGAGGCAACTGCAAAGCATTTCATGCAGCAGCTGGCTGCTGGTCTACTAGTTCTTCGAGATAATAACCTTATTCATCGAGACCTGAAACCACAGAACCTTCTTCTCTCCCAGAATGATGAGAAGTCAGTGCTGAAGATTGCTGACTTTGGATTTGCAAGATCTCTGCAACCTAGGGGCCTTGCGGAAACCTTGTGTGGTTCACCACTCTATATGGCTCCAGAAATCATGCAACTGCAGAAGTATGACGCTAAGGCAGATCTCTGGAGTGTTGGTGCAATCTTATTTCAGCTGGTTACTGGGAGAACACCTTTTACTGGAAACAATCAAATACAGTTACTACAGAATATTTTGAAATCGACAGAATTGCAGTTTCCATCTGATATCCCAAGTCTGAGTTTTGAATGCAAAGATTTGTGTCAGAAATTGCTACGCCGGAATCCAGTGGAACGTCTAACTTTCGAAGAATTTTTTAACCACCCATTTCTTTCTCAGAAGCAAAGAGAACAGGATGATGAGCCATTGAGGAGTAGAAGTTCTTCAAGGCTGGTTGGTGGGTTCTTTTCTACAGTATCTGACCCTTTGAGAAGAACTGAGGAAAATTACCAAGAAGATTGTTTGCCTTTCATCCTAGATGACGACTCTGGTGGCCCTGAGGGGAGTCCATCCTTTTCAAGAAAAAAGTCCTCAATAAAGTCCACCTATGGATTTGATCTAAATTCTAAACTAGATAAAGCAGAATCAACATCTCCTATCTCTAATAACATAAATTCTAATTCTGCATTTCGTACTATGACACAAAGATCTCAAAACACTAATAGGAGATTGGACAACCATAACATTTCAAGAGATCTCACTGATCCGCTAGAATCTCCAGAACAGATGTTCGCAAATCCTTATCCAAAAGTTACGGATTCCCTGGAGAATATTGATCAAGAATATGTTCTGGTGCCAGGGCCCCCTATAGATGTTTCATCTTCGGTGGGTGCTTCCAGGCCCAGCCATACCCAATATAGGTCTGGTAGTTTACCTCAAGAGTCTTCTAGTGCAATCACCAGACCAAGTGCTCCAATGCCAATAGTTGGTGCACATACAAATAGCATGTACCAAGTTGGAAGTTCAGGTAGCCAGGACTCTGCCCCTGGGACTTCGCTTGGATCAATGGATATAAGTGATGAACAGCCATCAGCTCACTGCATGACCAGGGTAAAATCATTGCAACAGTGTGCATCTGCCATCACCGAGTTAGTTAATGAGAAGATGGAGGCAGGAAAGCATCTGGAAGCATTTTCTATTCAGCTTGTAATTCTTGCAATCTGGAAGCAAGCACTGCACATATGCCATACACAAGCTGCCTCAGCCATGGAAGGAAGTCCAAATCAAGAAACTTCAAGATATAGAAGGAGTGCCAGTAGGAAGCATGGCAGTCCTGATTCAGAAGAATGCCTTGAGGGAAACACCCTATGGCCGAAGGATATATTATCTAAAATTGAAAGTGAATTTTTGAGGGAATTTGAGCATGCTGAAGAGCTTGCCAAGACCATTGAGCCTGGAAACACCGAGATGCCAGATGCAATGGAGACAATATTTCAATCTGCTCTTGCTTTTGGAAGGCATGGGGGTGTAGAAGAACTCATGGGTGACATGGAAAGTGCAGCTGCATTGTATTCAAAAGCTGTTCGTCTGTTAGTTTTTCTTCTAGTGGAAGGACCATCCCTGATTCTTAATCCTCCCTTTTCGCTGACAAACTCAGATCGTTACAGACTTCGAAATTACATTGATATTCTTAATAACAGACAAGGTTATTCAAGGTCCCAGCGAATGGCACTTCTGAAATGTGATGACAATCAAGGTATCCTTAAGGAAAAATTTTAG 2199 0.4388 MAQAVGRNRVVGEYVVGRQIGAGSFSVVWHGRHKVHGTEVAIKEIATLRLNKKLQESLMSEIFILKRINHPNIICLHDIIQVPGKIHLVLEYCKGGDLSLYIQRHGRVPEATAKHFMQQLAAGLLVLRDNNLIHRDLKPQNLLLSQNDEKSVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGRTPFTGNNQIQLLQNILKSTELQFPSDIPSLSFECKDLCQKLLRRNPVERLTFEEFFNHPFLSQKQREQDDEPLRSRSSSRLVGGFFSTVSDPLRRTEENYQEDCLPFILDDDSGGPEGSPSFSRKKSSIKSTYGFDLNSKLDKAESTSPISNNINSNSAFRTMTQRSQNTNRRLDNHNISRDLTDPLESPEQMFANPYPKVTDSLENIDQEYVLVPGPPIDVSSSVGASRPSHTQYRSGSLPQESSSAITRPSAPMPIVGAHTNSMYQVGSSGSQDSAPGTSLGSMDISDEQPSAHCMTRVKSLQQCASAITELVNEKMEAGKHLEAFSIQLVILAIWKQALHICHTQAASAMEGSPNQETSRYRRSASRKHGSPDSEECLEGNTLWPKDILSKIESEFLREFEHAEELAKTIEPGNTEMPDAMETIFQSALAFGRHGGVEELMGDMESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNSDRYRLRNYIDILNNRQGYSRSQRMALLKCDDNQGILKEKF 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00779 732 MobiDBLite consensus disorder prediction 353 405 - -
Viun10g00779 732 SMART serkin_6 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00779 732 SUPERFAMILY Protein kinase-like (PK-like) 10 448 IPR011009 -
Viun10g00779 732 MobiDBLite consensus disorder prediction 574 588 - -
Viun10g00779 732 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Viun10g00779 732 MobiDBLite consensus disorder prediction 318 337 - -
Viun10g00779 732 Gene3D Transferase(Phosphotransferase) domain 1 5 311 - -
Viun10g00779 732 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 3 641 IPR045269 GO:0004674|GO:0006914
Viun10g00779 732 CDD STKc_ATG1_ULK_like 20 270 - -
Viun10g00779 732 ProSiteProfiles Protein kinase domain profile. 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00779 732 Pfam Protein kinase domain 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00779 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Viun10g00779 732 FunFam Serine/threonine-protein kinase ATG1 6 313 - -
Viun10g00779 732 MobiDBLite consensus disorder prediction 433 462 - -
Viun10g00779 732 MobiDBLite consensus disorder prediction 560 592 - -
Viun10g00779 732 MobiDBLite consensus disorder prediction 353 384 - -
Viun10g00779 732 MobiDBLite consensus disorder prediction 435 462 - -
Viun10g00779 732 FunFam Aurora kinase A 7 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00779 Viun-Chr10 8747563 8755471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00779 10 281 CBL-interacting serine-threonine protein kinases AT2G30360 36.879 6.00e-53 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Viun10g00779 Pkinase 2.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00779 K08269 - gmx:100791596 1305.81