Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00758 ATCTCATGGCTGCTACTACTTTGCTTCTCCTCACAAAGAAAATGCAGAAATAAGGGAACTTGTGAGCCCTATTATTCATTCTGGTGTCTCTTCTTTGACTCCTTTGGAAAACCAACCACAAAACAACACACCAAAAAGGGTCAATGTTGGACTAAGAGAAAGTACTCTTTGAGCTCTACTCTTACTTCACCAACCAACCCTTCCTATGGTGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGTGTGTGGCCTCCAAGATCATACTCTTGTAGCTTCTGCAGAAGAGAGTTTAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGGTTAAAGCAACAACCCTCAAGCCCCCACAATGAAATTCTATGTCATGAACTTAAAACTCAGCTCAACAAGCCAGTTCAAAGTCCTTTTTCTTCTTCTCTGGATGATTGCCTATACCCTTCTGTTTGTGGATTGCCTTATAGAAAAGCTAAACCTAATTCTTATCATGATTTTGTTGCTTCACCTTCTTCACCCTCACATTCCAAGCCCTTGTTGGCTCCATCAGTTAATAGTGGTAACCCCAGAGAGGAAACCATGATTCCGTTTTATGATTCCAGTGTTCTCCACAAGATTTCTCCTGTCAGCAACTCTTCCGAATCATGGCCAAGTTTAGCTGAAGATCATAGATTATATTCATGTAAGTTTCATCCTCAAGCTGATTCCAAGAAACCCTCCAAGGGAATAATGGATTCTAGATGTAGGGGTGATGATATTGATGGAGATATGAGCTTGAATTCAGTTGTGTGTAGCACTCACCCATCTTTGCAGTTTGAGAGTACTAAAGAAGCAGATCATATCAGTTGCAAGAAGAGGAAAACAGATGCTTCTTCATCACCATTTTCACCAAAGTCAAGCTCAGTTGACAGACATCATGTGCAGACAAAGATGTTTGAATTTAGCCCTAGCTCAATGGAAGAGCTGGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG 1050 0.4181 ISWLLLLCFSSQRKCRNKGTCEPYYSFWCLFFDSFGKPTTKQHTKKGQCWTKRKYSLSSTLTSPTNPSYGDSWEEQAFAEDAANSLGGCVWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCHELKTQLNKPVQSPFSSSLDDCLYPSVCGLPYRKAKPNSYHDFVASPSSPSHSKPLLAPSVNSGNPREETMIPFYDSSVLHKISPVSNSSESWPSLAEDHRLYSCKFHPQADSKKPSKGIMDSRCRGDDIDGDMSLNSVVCSTHPSLQFESTKEADHISCKKRKTDASSSPFSPKSSSVDRHHVQTKMFEFSPSSMEELDLELRLGNRSKV 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00758 349 MobiDBLite consensus disorder prediction 303 317 - -
Viun10g00758 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Viun10g00758 349 MobiDBLite consensus disorder prediction 182 203 - -
Viun10g00758 349 PANTHER OS07G0101800 PROTEIN 70 346 - -
Viun10g00758 349 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Viun10g00758 349 MobiDBLite consensus disorder prediction 290 319 - -
Viun10g00758 349 Gene3D Classic Zinc Finger 92 149 - -
Viun10g00758 349 SMART c2h2final6 96 118 IPR013087 -
Viun10g00758 349 Pfam C2H2-type zinc finger 96 120 - -
Viun10g00758 349 SUPERFAMILY beta-beta-alpha zinc fingers 93 122 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00758 Viun-Chr10 7988715 7990315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00758 72 127 C2H2 Transcription Factor Family AT2G37740 82.143 2.57e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun10g00758 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00758 - - gmx:100801427 485.337