LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g00736	ATGGACTTGAGGGACGCAAAAGTTGGCTTCTTTCTGTTTTGTAGTTTCTGTCTTGTCACTTTCTCCGAACAAGATGGTTTCTTGAGTCTTTCTTGTGGTGGAAGAACAAGTTTCAGGGATTCATCTAACATTTCGTGGGTACCAGACACCACCTATGTAACCACAGGAAAGACTGCTACCATCACATACAGTGATGGTTCCAACAACTCACTGAACATCTCAGCTCGGTTCTTCCCAAATTCTAGAAGGCGAAAATGTTACAGAATACCAGCAAACAATTCAACAGCTTTGGTTCTTGTTAGAGCAAAATTTGTGTACAAGAACTATGATGGACTTGGGAAACCTCCTAAGTTCTATGTTTCAATTGGGACATCTATTGCAGCCACCATAAATCTTGCTGAAGATGATCCATGGAGTGAAGAGTTTCTATGGACAGTCAACATGGATACACTGTCATTCTGCTTAATTGCAATGCCTGGAGGGGGTTCACCTGTAATTTCTTCTCTTGAAATCAGACCACTTCCTCAGAGAGCCTACACAAATGGCATGACAGATTTTCCTAACAAGTTGCTTAGGAAGAGTTATAGAATTGATTGTGGGCATTCAAATGATTCCATAAGGTATCCCTTGGATCCATTTGATAGAATATGGGATGCTGATAGAAGTTTCACACCCTTTCATGTTGCCATTGGGTTTAAGATTCAACTTAGCTTCAGACAGTCCAGTCTTGTAGAAGAACCACCAGCAGCTGTTCTTCAAACTGGAAGAGTTTTGGCAAGAAGTAATGCTCTGACATACAACCTCCCTCTTGATGCATTAGGGGACTACTACATCATCCTCTACTTTGCAGGGATTCTTCCTGTCTTCCCCTCATTTGATGTTCTTATAAATGGAGAACTAGTAAAATCAAACTACAAAATAAATAGCTCTGAAACCAGTGCTTTATACTTAACGCGAAAGGGAATTGGAAGCTTGAATATAACTTTAAAGAGTATCAGCTTTTACCCTCAGATCAATGCATTTGAGGTTTATAAGATTGTTGATATTCCAACTGATGCCTCATCAACCACAGTTTCAGCACTGCAGGTTATTCAGCAGTCCACTGGATTGGATCTTGGATGGCAGGATGATCCATGTCTGCCTTCTCCATGGGAGAAAATTCACTGTGAAGGAAGCCTTGTTACATCATTGGATCTTTCAGACATAAATTTGAGATCCGTTAGTCCAACATTCGGTGACTTACTAGACCTCAAAATACTGGATTTGCACAACACATCGCTTACCGGTGAAATACAGAATTTGGATGGCTTGCAGCATATTGAGAAACTGAACCTGAGTTTCAATCAGCTAACATCTATTGGTGCAGACCTTCAGAACTTGATTAACCTTCAAATATTAGACTTGCAGAACAATAGTTTAATGGGAACAGTACCTGATAGCTTGGGAGAGTTAGAGGACCTCCACTTACTGAATCTGGAAAACAACAAACTACAAGGTCCTCTGCCACAGTCTTTGAACAAAGAAACGTTGGAGATCAGGACATCTGGTAATTTATGTCTTACCTTTTCCACAACATCATGTGATGATGATGCATCATCCAGTCCTCCAATTGAAGCACCGCAAGTTACTGTAGTTCCTCAGAAGAAGCACAATGTACATAGCCATCTAGCAATCATACTAGGCATGGTTGGAGGAGCCATAATAGCCTTTCTCTTAATGTGTATTTCAGTATTGATATACAAGACCAAACAACACTATGAAGCCTCCCACACATCAAGAGGAGAAATGGATATGAGGAACTGGGGTGCTGCAAAAGTATTTTCCTACAAAGAAATCAAAGTAGCTACAAGAAACTTCAAGGAAATCATAGGAAAGGGTAGTTTTGGATCTGTTTATCTTGGTAAACTCCCAGATGGAAAATCTGTAGCTGTCAAAGTTCGTTTTGACAAATCTCAACTGGGTGCTGATTCTTTCATCAATGAGGTTAATCTTTTATCAAAAATCCGGCATCAAAATCTTGTGTCTTTGGAAGGATTTTGTCATGAAAGAAAGCATCAGATATTGGTTTATGAGTACTTACCTGGTGGATCCCTGGCTGATCACCTCTATGGTTGTCAAAAGACTTCCTTAAGCTGGGTGAGAAGGTTGAAAATTGCTGTTGATGCAGCAAAAGGTTTGGACTATTTGCACAATGGAAGTGAACCAAGAATCATACATCGTGATGTGAAGTGCAGTAACATCCTCTTGGACATGGAAATGAATGGCAAGGTCTGTGACTTAGGTCTCTCTAAGCAAGTAACTCAGGCAGATGCAACTCATGTCACCACTGTTGTTAAGGGCACTGCTGGTTACCTTGATCCAGAGTATTATTCCACTCAACAGTTGACTGAGAAAAGTGATGTATATAGTTTTGGAGTTGTTCTTTTGGAACTCATTTGTGGAAGAGAGCCATTGACTCACTCTGGAAACCCTGATTCATTCAACTTGGTGTTATGGGCGAAACCATACTTGCAGGCTGGTGCATTTGAGATAGTGGATGAAGACATAAGAGGAAGTTTTGATCCCTTGAGTATGAAGAAAGCAGCTTTCATTGCTATAAAGTCAGTGGAGAGGGATGCATCACAGAGACCATCTATTGCAGAGGTGTTGACAGAGCTAAAGGAAGCCTACAATATTCAACTCAGATTCCTTGAATCTTGTGAAAATGAGAATTGA	2715	0.4044	MDLRDAKVGFFLFCSFCLVTFSEQDGFLSLSCGGRTSFRDSSNISWVPDTTYVTTGKTATITYSDGSNNSLNISARFFPNSRRRKCYRIPANNSTALVLVRAKFVYKNYDGLGKPPKFYVSIGTSIAATINLAEDDPWSEEFLWTVNMDTLSFCLIAMPGGGSPVISSLEIRPLPQRAYTNGMTDFPNKLLRKSYRIDCGHSNDSIRYPLDPFDRIWDADRSFTPFHVAIGFKIQLSFRQSSLVEEPPAAVLQTGRVLARSNALTYNLPLDALGDYYIILYFAGILPVFPSFDVLINGELVKSNYKINSSETSALYLTRKGIGSLNITLKSISFYPQINAFEVYKIVDIPTDASSTTVSALQVIQQSTGLDLGWQDDPCLPSPWEKIHCEGSLVTSLDLSDINLRSVSPTFGDLLDLKILDLHNTSLTGEIQNLDGLQHIEKLNLSFNQLTSIGADLQNLINLQILDLQNNSLMGTVPDSLGELEDLHLLNLENNKLQGPLPQSLNKETLEIRTSGNLCLTFSTTSCDDDASSSPPIEAPQVTVVPQKKHNVHSHLAIILGMVGGAIIAFLLMCISVLIYKTKQHYEASHTSRGEMDMRNWGAAKVFSYKEIKVATRNFKEIIGKGSFGSVYLGKLPDGKSVAVKVRFDKSQLGADSFINEVNLLSKIRHQNLVSLEGFCHERKHQILVYEYLPGGSLADHLYGCQKTSLSWVRRLKIAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNGKVCDLGLSKQVTQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLTHSGNPDSFNLVLWAKPYLQAGAFEIVDEDIRGSFDPLSMKKAAFIAIKSVERDASQRPSIAEVLTELKEAYNIQLRFLESCENEN	904

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g00736	904	ProSiteProfiles	Protein kinase domain profile.	617	897	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun10g00736	904	SMART	serkin_6	617	890	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun10g00736	904	Gene3D	Phosphorylase Kinase; domain 1	589	692	-	-
	Viun10g00736	904	SUPERFAMILY	Protein kinase-like (PK-like)	597	886	IPR011009	-
	Viun10g00736	904	Gene3D	Transferase(Phosphotransferase) domain 1	693	899	-	-
	Viun10g00736	904	PANTHER	OS07G0107800 PROTEIN-RELATED	452	890	-	-
	Viun10g00736	904	ProSitePatterns	Protein kinases ATP-binding region signature.	623	645	IPR017441	GO:0005524
	Viun10g00736	904	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	737	749	IPR008271	GO:0004672\|GO:0006468
	Viun10g00736	904	ProSiteProfiles	Leucine-rich repeat profile.	439	461	IPR001611	GO:0005515
	Viun10g00736	904	CDD	STKc_IRAK	623	888	-	-
	Viun10g00736	904	SMART	LRR_typ_2	437	459	IPR003591	-
	Viun10g00736	904	SMART	LRR_typ_2	460	484	IPR003591	-
	Viun10g00736	904	Pfam	Protein kinase domain	619	884	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun10g00736	904	FunFam	serine/threonine-protein kinase PBS1-like	584	692	-	-
	Viun10g00736	904	Pfam	Malectin-like domain	30	346	IPR024788	-
	Viun10g00736	904	SUPERFAMILY	L domain-like	359	507	-	-
	Viun10g00736	904	Gene3D	Ribonuclease Inhibitor	357	529	IPR032675	-
	Viun10g00736	904	Gene3D	-	193	347	-	-
	Viun10g00736	904	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	693	897	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g00736	Viun-Chr10	7567060	7574410	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun10g00736	10	899	Receptor kinase-like Gene Family	AT5G48740	62.444	0.0	1106

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Viun10g00736		Malectin_like	1.4e-53	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g00736	-		-	vum:124845082	1684.85