Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00720 ATGGTGGAATCAACCTCATCAAACCCAAAGTGGTACAAAGAGAAAATCATCATTCAAACAACACCAAGTTTCCCACATTCAAAATTCATGGGTTTTCCAACCAGCATCAATCACTTGTTTCTGCTCATATTTTCCAGCTTCTGTTTAGGTGCAATCTCTGCGAATGATACCATCACATCAACCAGATTCATCAGCGACTCTGACTCTCAGATTACAAGCTCAAGCAACGGTGATTTCAAGGTTGGATTTTTCAGCCCTGAAAACTCCACAAATCGCTATGTGGCAATCTGGTATCTCTCTCAGACCAACATCATATGGGTAGGAAATAGAGATGAACCACTGAAGGATTCATCTGGGGTGTTCAAAATCCACGAGGATGGGAATCTTGTGGTGCTGAATGGAGAAAATAGTGTGATATGGTCAACAAATGTATCAGTTGGTGGTACCAACACAAGTGCTCAACTTGACAATTCAGGAAATCTGATCCTGCGTGGTGACTCAAGTTTAACACCATTATGGGACAGTTTCACACACCCTGCTGATATTGCTGTGCCACAGATGAAAATTGCCACCAATAGGATCACTGGTGAGAAAATCGAGTATGTGTCATGGAAAAGCAGTTCTGATCCTTCTACTGGGTACTTCACTGGGAGCCTTGAAAGGTTGGATGCACCAGAGGTGTTTTTCTGGTACAACAAAACAAAGCCATATTGGAGAACTGGTCCATGGAATGGAAGAGTGTTCCTAGGATCACCAAGGATGTTAACTGAGTACTTATACGGGTGGCGTTTTGAGCCTAATGATAATGGAACAGCATATCTAACCTACAACTTCGAAAAACCTGCCATGTTTGGAATCCTTACCATAACCCCACATGGCACACTGAAACTGGTAGAGTTTTTGAACAGAACCAAGTTTCTGGAACTTGAGGTGGATCAAAACGAATGTGACTTTTATGGGAAGTGTGGACCCTTTGGAAGCTGTGATAACTCCACAGCACCAATTTGCAGCTGTTTTGAGGGGTTTGAGGCACGCAAGCCAGAGGAATGGAACAGTGGAAATTGGACAAGTGGGTGTGTGAGGAGTGTGCCACTGAATTGTGGCAAGTTGAGAAATGGGAGTGAAGTTGAAGAAGGAGATAGTTTTCTGCAGAAACATAACATGAAAGTGCCTGATTTTGCAGAGAGATCAGATGGAAACCAAGAAAAATGTGGTGCAGATTGCTTGGCAAATTGCTCTTGCTTGGCTTATGCATATGATTCTTACATTGGTTGCATGTATTGGAGTAGGGAATTGATTGATTTGCAGAAATTTCCTTATGGAGGGGTTGATCTCTTCATTCGTGTTCCATCACAACTTCTACCTAGTGGTAAAAAGAGAAGAGAAACGAAGGGATTAATAATCGGTATTGTGGTAGCAATTGGAGCATTAGCAACTGCAATCGGCGCTTATCTTTTGTGGCGGAAATTTACTCCTAAGCATACAGGAAGTGTGCCTGAAGACGTGATTACCGGAAAGAAAAAGGAAATTACTAAATTGGAAGAGTTACCCCTATTTAAGTTTGAAAAGCTTTCAAATGCTACAAACAATTTTCACTTTGGTAACATGCTTGGAAAAGGAGGTTTTGGTCCTGTATACAAGGGACAATTGGAGAACGGACAAGAAGTTGCTGTAAAAAGACTTTCAAAAACATCTGGACAAGGATTGGAAGAATTCATGAATGAAGTCGTGGTGATTTCTAAACTTCAACATCGAAATCTAGTAAGACTTCTTGGATGTTGCATAGAAGGAGACGAACCAATGTTGGTCTATGAGTTTATGCCAAATAAAAGTTTGGATTCATTTCTATTCGATCCACTCCAAAGGAAAGTTTTAGATTGGAAAAAGCGCTTCAACATAATTGAAGGAATAGCGCGAGGAATACTTTATCTTCATAGAGATTCAAGACTAAGAATTATACATAGAGATCTTAAAGCAAGCAACATCTTATTGGATAATGATATGAATCCAAAAATATCAGACTTTGGTTTAGCAAGAATTGTTAGAGGAGGTGATGATGATGAAGCTAACACAAAAAGGGTTGTTGGAACTTATGGTTATATGCCACCTGAATATGCAATGGAGGGACTTTTCTCAGAAAAATCAGATGTGTATAGCTTTGGAGTATTATTACTAGAGATTGTAAGTGGACGAAGAAATACTAGTTTTCATAATGATGAGCAATCACTTAGCCTTGTTGGATTTGCATGGAGACTATGGAATGAAGGCAACATTATAACTATAATAGATCCAGAGATATGGGATCCAATGTTTGAAAAAAGTATGTTGAAGTGCATACACATAGGACTTTTGTGTGTGCAAGAACTTACAAAAGAAAGGCCATCTATATCGACTGTGGTTTTGATGCTTATAAGTGAGATTACACATCTTCCTCCTCCAAGACAAGTTGCTTTTGTTCAAAAACAAAATTGTCAAAGTTCGGAGTCTTCTCAAAAAAGTCAATTTAATTCAAACAACAATGTAACTCTAAGTGAAATTCAAGGTAGATAA 2550 0.3929 MVESTSSNPKWYKEKIIIQTTPSFPHSKFMGFPTSINHLFLLIFSSFCLGAISANDTITSTRFISDSDSQITSSSNGDFKVGFFSPENSTNRYVAIWYLSQTNIIWVGNRDEPLKDSSGVFKIHEDGNLVVLNGENSVIWSTNVSVGGTNTSAQLDNSGNLILRGDSSLTPLWDSFTHPADIAVPQMKIATNRITGEKIEYVSWKSSSDPSTGYFTGSLERLDAPEVFFWYNKTKPYWRTGPWNGRVFLGSPRMLTEYLYGWRFEPNDNGTAYLTYNFEKPAMFGILTITPHGTLKLVEFLNRTKFLELEVDQNECDFYGKCGPFGSCDNSTAPICSCFEGFEARKPEEWNSGNWTSGCVRSVPLNCGKLRNGSEVEEGDSFLQKHNMKVPDFAERSDGNQEKCGADCLANCSCLAYAYDSYIGCMYWSRELIDLQKFPYGGVDLFIRVPSQLLPSGKKRRETKGLIIGIVVAIGALATAIGAYLLWRKFTPKHTGSVPEDVITGKKKEITKLEELPLFKFEKLSNATNNFHFGNMLGKGGFGPVYKGQLENGQEVAVKRLSKTSGQGLEEFMNEVVVISKLQHRNLVRLLGCCIEGDEPMLVYEFMPNKSLDSFLFDPLQRKVLDWKKRFNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDNDMNPKISDFGLARIVRGGDDDEANTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNTSFHNDEQSLSLVGFAWRLWNEGNIITIIDPEIWDPMFEKSMLKCIHIGLLCVQELTKERPSISTVVLMLISEITHLPPPRQVAFVQKQNCQSSESSQKSQFNSNNNVTLSEIQGR 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00720 849 Pfam PAN-like domain 377 435 IPR003609 -
Viun10g00720 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 607 811 - -
Viun10g00720 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 498 606 - -
Viun10g00720 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Viun10g00720 849 CDD B_lectin 67 179 IPR001480 -
Viun10g00720 849 ProSiteProfiles PAN/Apple domain profile. 367 450 IPR003609 -
Viun10g00720 849 SUPERFAMILY Protein kinase-like (PK-like) 516 823 IPR011009 -
Viun10g00720 849 SMART blect_4 62 179 IPR001480 -
Viun10g00720 849 Pfam Protein tyrosine and serine/threonine kinase 532 749 IPR001245 GO:0004672|GO:0006468
Viun10g00720 849 ProSiteProfiles Protein kinase domain profile. 531 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00720 849 Pfam S-locus glycoprotein domain 238 345 IPR000858 GO:0048544
Viun10g00720 849 Gene3D Transferase(Phosphotransferase) domain 1 607 811 - -
Viun10g00720 849 PIRSF SRK 28 849 IPR024171 GO:0004674
Viun10g00720 849 Gene3D - 51 178 IPR036426 -
Viun10g00720 849 ProSiteProfiles Bulb-type lectin domain profile. 55 176 IPR001480 -
Viun10g00720 849 CDD STKc_IRAK 537 803 - -
Viun10g00720 849 CDD PAN_AP_plant 363 450 - -
Viun10g00720 849 Gene3D Phosphorylase Kinase; domain 1 505 606 - -
Viun10g00720 849 MobiDBLite consensus disorder prediction 827 849 - -
Viun10g00720 849 SMART serkin_6 531 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00720 849 ProSiteProfiles EGF-like domain profile. 312 348 IPR000742 -
Viun10g00720 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 51 176 - -
Viun10g00720 849 SUPERFAMILY alpha-D-mannose-specific plant lectins 95 210 IPR036426 -
Viun10g00720 849 SMART ntp_6 377 449 IPR003609 -
Viun10g00720 849 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 40 795 - -
Viun10g00720 849 Pfam D-mannose binding lectin 104 205 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00720 Viun-Chr10 7418169 7426981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00720 509 849 Receptor kinase-like Gene Family AT4G11530 56.609 2.24e-127 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun10g00720 PK_Tyr_Ser-Thr 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00720 - - ccaj:109790907 1378.23