Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00710 ATGGAAGGTCGCCGGAGGATAACGCTTTACGACCAAATGACGGCTAGCAACGGCAATACCAACAGCGGCAGCAGCAGCCGAGATTCACTAGCGAGCCTCATGCTCGACGACGTCGTATTCAAGAAGGCCGCAGCCGACGCCGAAGCGAGCCGTGACCTGAGCCGAAGCCGGACTCTCCAAGACATCATTCGCGAAGAGAAACCTAACGGAGACGCGAAGGATCGCAACTCTTGGAAAGCCTTCAAGGAGAAGCTTCGGCTGAAGCGCGCTATCGGCTTGGCTTGGTCCTCCGCCACTACTCACAGTAATAACAGCAATAATAACGACAATGAAGACGGACATTTACCTCAAACTCGCCTACTCTCGGACGACGCGGCGACTCAGCAGAACGACGTCGTCGTGGAGGACGCAAACGATTCAGATCCGATCGCGCGGTTCGGATCTCCGACGGACAACACGGCGGCCGGCGGCGATTCCTCCGACGGGGAGAACAACCAGGAGGCGGCGGTTGGCGTGTCGCTGATGGATTTGTTGGAGGAAGCGGAGCAGGAAATGGATTTGTACAGAGTGAGCGATGATGAAGTGGTGGCAGAGTTTGAGAAGAGAGAAGAAGATGAAGCGGAAGATGAAGAAAAAGAGGGTTTGGTGGAGTATAACTGCTGCGTCTGCATGGTGCGCCATAAAGGCGCGGCGTTTATCCCGTGCGGACACACCTTCTGCAGAATGTGTTGCAGGGAGATTTGGGCCAGCAGAGGAAACTGCCCTCTCTGCAATAATTTAATTTTGGAAATTCTTGATATTTTCTGA 807 0.5415 MEGRRRITLYDQMTASNGNTNSGSSSRDSLASLMLDDVVFKKAAADAEASRDLSRSRTLQDIIREEKPNGDAKDRNSWKAFKEKLRLKRAIGLAWSSATTHSNNSNNNDNEDGHLPQTRLLSDDAATQQNDVVVEDANDSDPIARFGSPTDNTAAGGDSSDGENNQEAAVGVSLMDLLEEAEQEMDLYRVSDDEVVAEFEKREEDEAEDEEKEGLVEYNCCVCMVRHKGAAFIPCGHTFCRMCCREIWASRGNCPLCNNLILEILDIF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00710 268 PANTHER OS01G0917900 PROTEIN 4 268 - -
Viun10g00710 268 SUPERFAMILY RING/U-box 219 264 - -
Viun10g00710 268 CDD RING-HC 220 257 - -
Viun10g00710 268 ProSiteProfiles Zinc finger RING-type profile. 220 258 IPR001841 -
Viun10g00710 268 MobiDBLite consensus disorder prediction 10 28 - -
Viun10g00710 268 Pfam Zinc finger, C3HC4 type (RING finger) 218 261 - -
Viun10g00710 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 265 IPR013083 -
Viun10g00710 268 SMART ring_2 220 257 IPR001841 -
Viun10g00710 268 MobiDBLite consensus disorder prediction 1 28 - -
Viun10g00710 268 MobiDBLite consensus disorder prediction 98 117 - -
Viun10g00710 268 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00710 Viun-Chr10 7211117 7212437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00710 4 268 C3H Transcription Factor Family AT3G25030 36.765 2.86e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00710 - - gmx:100819018 325.865