Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00630 ATGATATGCATCATAATTTTTTATTTTCGATACAAGTCATTAACTCCACTGGTAAATCTTTGTTGGACTACAAAGAGTGACCTAAATATTGAAGAATTCTTGAAAGATCACGGATCTGTAGCATTGAAAAGATACACATTTTCAGAAGTGAAGAAAATGACTAATTCCTTCAAAGTTAAACTTGGTCAAGGTGGATTTGGTGCAGTATACAAAGGAAAACTACCAACCGGATGCCCTGTGGCTGTAAAATTATTAAACGTGTCTAAAAGAAATGGTGAAGAGTTCATCAATGAGGTTGCTAGCATCAGTAGAACCTCTCATGTTAATATTGTCACACTTCAAGGATTTTGTTTGGAAGGTCGAAGGAAAGCTCTCATTTATGAGTTCATGGCTAATGGTTCCTTAGACAAGTTAATCTACAACAGCGGGCCAGAATCCATTGCATCATTGAGTTGGGAGAATTTGTATCAGATCTCAATAGGGATAGCTCGAGGGTTGGAGTACTTGCATAGGGGATGTAATACTCGAATTTTACATTTTGACATAAAACCACATAATATTCTTTTGGATGAGAATTTTTGTCCTAAGATATCAGATTTTGGGCTAGCAAAACTTTGTCCCAGGAAAGAAAGCATTATTTCCTTGTCAGATACTAGAGGAACAATGGGATATGTGGCTCCAGAAATGTGCAATAGACATTTTGGTGGAGTTTCCCATAAGTCTGATGTTTACAGCTATGGGATGATGTTGCTAGAAATGGTAGGAGGGAGGAAGAACATTAATGCTGAAGCTAGTCACACAAGTGAGATATACTTCCCATATCTGGTATATAGGAGGCTTGAGGAAGACAACAATGTAAGACCAGATCAAGTGATGACCATAGAAGAAAATGAGATTGTTAGGAGAATGACCATAGTGGGATTATGGTGTATTCAAACGTTTCCCAATGATAGACCTACAATGAGTGGAGTGGTGGAAATGTTGGAAGGCAACATCAATTCTTTGGAAATGCCACCAAAACCTTTGTTTTCTTCTCCTGCTAGATCAGTTTCATGCTCTTTCTCTGGAATTTGA 1074 0.3771 MICIIIFYFRYKSLTPLVNLCWTTKSDLNIEEFLKDHGSVALKRYTFSEVKKMTNSFKVKLGQGGFGAVYKGKLPTGCPVAVKLLNVSKRNGEEFINEVASISRTSHVNIVTLQGFCLEGRRKALIYEFMANGSLDKLIYNSGPESIASLSWENLYQISIGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESIISLSDTRGTMGYVAPEMCNRHFGGVSHKSDVYSYGMMLLEMVGGRKNINAEASHTSEIYFPYLVYRRLEEDNNVRPDQVMTIEENEIVRRMTIVGLWCIQTFPNDRPTMSGVVEMLEGNINSLEMPPKPLFSSPARSVSCSFSGI 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00630 357 ProSitePatterns Protein kinases ATP-binding region signature. 61 83 IPR017441 GO:0005524
Viun10g00630 357 FunFam serine/threonine-protein kinase PBS1-like 24 129 - -
Viun10g00630 357 FunFam PR5-like receptor kinase 130 340 - -
Viun10g00630 357 SUPERFAMILY Protein kinase-like (PK-like) 40 329 IPR011009 -
Viun10g00630 357 Gene3D Phosphorylase Kinase; domain 1 27 129 - -
Viun10g00630 357 PANTHER RUST RESISTANCE KINASE LR10-RELATED 26 345 IPR045874 GO:0004672
Viun10g00630 357 SMART serkin_6 55 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00630 357 Pfam Protein kinase domain 58 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00630 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Viun10g00630 357 ProSiteProfiles Protein kinase domain profile. 55 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00630 357 Gene3D Transferase(Phosphotransferase) domain 1 130 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00630 Viun-Chr10 5979796 5982939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00630 25 344 Receptor kinase-like Gene Family AT4G18250 58.537 1.20e-126 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun10g00630 Pkinase 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00630 - - gmx:100799800 608.216