Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00627 ATGTTTTGGTTTATATATGTTCCCCTGCTTTTCCACTTTACATGCAACTCCAAACACACTGTTTTTGCTTCTGAAAGTGAGATCGATCATACGGCACTCATCAAATTCAAAGAATCAATATCGAGTGACCCAAATGGAATCTTGGTTTCTTGGAACACTTCAACTCACTTCTGCAATTGGTATGGAATCACATGCCATCCCACACTTGGAAGGGTTACTGAGCTGAACTTGCAAGGACACAGGTTGAAAGGGTACATATCTCCTCACATAGGTAACCTCTCTTACATGACAACATTTAAACTTGGAAACAACAGTTTGTATGGCAATATCCCACTAGAAGTGGGAAGATTGTCCCAATTGCAGATATTCAGAGTTGAAAATAACACATTGGCAGGAGAAATTCCTTTGAATTTGACACATTGTACTCAGCTCAAAAGTTTATATTTGTATGGAAACAATCTGAAGGGAAAAATACCTACTGAAATCGGATTGCTCCAGAACATTCAGGTTTTGAACTTTGGTCGAAACCAGTTAACAGGACAAATTCCATCTTCGATTGTGAATCTTTCTTCAATAAGACGTGTCTTTCTTCCTGATAACAACTTAGAAGGAGAAATTCCACAAGAAATATGTCATCTCAAAAGCTTGACGACCGTAGCTTTAGGTGGAAACAAACTGAGTGGATCATTTCCCTCCTGTCTTTATAATATATCATCTCTGACTGTAATCTCAATTGGAGGAAATCAATTTAGTAACTCTCTTCCACCCAACATGTTTCACACCCTCCAGAATCTCCGAGTACTTTTACTCTATAACAACCAATTCTATGGTCCAATCCCACCTTCCATTGCAAATGCATCCACCCTTTCACTCCTTGATCTCTCTAAAAACCATTTTTGGGGAAGAATTCCAAGTCTTGGAAAACTACAAGATCTTTATCTCCTAAATTTGGGTGAAAACAGTTTAGGTTACAACTCAACTAATGATTTGGAGTTTTTAAAATCATTGGTTAATTGTACTAAGTTGAAATATTTATGTCTATCTATTAATAGTTTTGGAGGTCATTTGCCAAATTCTTTGGGAAATTTGTCCACTCAACTAAGTGAACTATATCTCGGATACAATGAGATATATGGAGAAATCCCTGAGTCAATAGGAAATTTAGTTGGCTTAACTGTCTTATCAATAGGCAATACCCACATTGATGGGAGTATCCCAACAACTTTTGGAAAGTTTACAAAGCTTGGAGTGTTAGTCTTATATAGAAACAAGTTGTCAGGAAAGATACAACCCTTCATTGGAAACTTTAGTCAATTGTTTTATTTGGACCTCCGAGCAAATCGGTTTGAAGGGAGTATTCCTCCAAGTATAGGAAATTGTCAAATGCTCCAACATTTAGATCTTTCACAGAACAATCTCACAGGAACCATACCACTAGAGCTTTTTAATCTTACCTCTCTATTTGAAAAGTTGGATTTGTCACATAACTCATTGAGTGGTAGTATACCAGATGAAGTGGGAAATATACACGATATTAACATTCTAGATATGTCAAACAATCATATATCTGGTCACATTCCTCTTGGTGTTGGAAAATGCGTAATGTTAGAGTACCTCTTTTTGCAAGGAAATTCTTTACAAGGAATCATACCATCTTCTTTGGCATCACTTAAAAGCATTGTACTTTTGGATCTGTCACAAAACCATTTGTCAGGATCAATTCCAAATTTCCTGCAAAACCTTTCTTTCTTACAACATTTGAATGTATCTTTTAACATGTTGGATGGTGAGGTACCCACTGAAGGTGTCTTTGGAAATGTAAGTGCATTGGTGGTGACTGGAAACAGTAAGCTTTGTGGAGGTATTTCTAAATTGCATCTACCACCATGCCCTGTTAAAAGTAAGAAACATGCAAAGAACCACAGGTTCAGATTGATCGTGGTGATATTAGGTGTAGCTGTTTTTCTCATTGTACTATCATCTACCTTAGCCATCTATTGGTCGAGGAAAAAGGGGAAGAAACCTTCCCTTAATTCATCAACAATTGACCAACTGGCTAAAGTTTCCTACCAAAGCTTGTACAATGGAACTGATGGTTTCTCAACTACAAACTTGATAGGGTGTGGGAATTTCAGTTCTGTCTACAAAGGAACTCTTGAGCTCGAAGACAGAGTTGTTGCCATAAAGGTTCTAAACCTGCAAAGAAAAGGAGCTCACAAGAGCTTCGTGGCCGAATGTAATGCACTCAAAAATATTAAACATCGAAATCTTGTTCAGATTTTGACATGTTGTTCCAGCACAGATTATAAAGGTCAGGAATTCAAAGCTTTGATCTTTGAGTACATGAGAAATGGAAGCTTAGAGCAATGGTTGCATCCTACCACAACAAGTGTTGAGCAGCCAAGAACATTGAGCCTTAAGCAAAGATTAAGTATCATGATTGACGTAGCTTCTGCATTACAATATCTTCATCATGAATGTGAGCAACCGATCATTCATTGTGATTTGAAGCCAGGCAATGTCCTTCTTGATGATGACATGATTGCTCATGTAAGTGATTTTGGCATAGCAAGACTTCTCTCAACAACCAAAGGTATCACCTCCAAACAATCATCAAGTACACTTGCAATAAAGGGTACTGTTGGTTATGCTCCCCCAGAGTATGGAGTGGGTGCTGAAGTGTCAACTTCTGGCGACATGTATAGCTTTGGAATTCTGATGTTGGAAATGCTTACTGGGAGAAGACCAACAGATGAAATATTTGAAGATGGTCAAAATATTTGTAACTTCGTTGCAATGTGA 2802 0.3765 MFWFIYVPLLFHFTCNSKHTVFASESEIDHTALIKFKESISSDPNGILVSWNTSTHFCNWYGITCHPTLGRVTELNLQGHRLKGYISPHIGNLSYMTTFKLGNNSLYGNIPLEVGRLSQLQIFRVENNTLAGEIPLNLTHCTQLKSLYLYGNNLKGKIPTEIGLLQNIQVLNFGRNQLTGQIPSSIVNLSSIRRVFLPDNNLEGEIPQEICHLKSLTTVALGGNKLSGSFPSCLYNISSLTVISIGGNQFSNSLPPNMFHTLQNLRVLLLYNNQFYGPIPPSIANASTLSLLDLSKNHFWGRIPSLGKLQDLYLLNLGENSLGYNSTNDLEFLKSLVNCTKLKYLCLSINSFGGHLPNSLGNLSTQLSELYLGYNEIYGEIPESIGNLVGLTVLSIGNTHIDGSIPTTFGKFTKLGVLVLYRNKLSGKIQPFIGNFSQLFYLDLRANRFEGSIPPSIGNCQMLQHLDLSQNNLTGTIPLELFNLTSLFEKLDLSHNSLSGSIPDEVGNIHDINILDMSNNHISGHIPLGVGKCVMLEYLFLQGNSLQGIIPSSLASLKSIVLLDLSQNHLSGSIPNFLQNLSFLQHLNVSFNMLDGEVPTEGVFGNVSALVVTGNSKLCGGISKLHLPPCPVKSKKHAKNHRFRLIVVILGVAVFLIVLSSTLAIYWSRKKGKKPSLNSSTIDQLAKVSYQSLYNGTDGFSTTNLIGCGNFSSVYKGTLELEDRVVAIKVLNLQRKGAHKSFVAECNALKNIKHRNLVQILTCCSSTDYKGQEFKALIFEYMRNGSLEQWLHPTTTSVEQPRTLSLKQRLSIMIDVASALQYLHHECEQPIIHCDLKPGNVLLDDDMIAHVSDFGIARLLSTTKGITSKQSSSTLAIKGTVGYAPPEYGVGAEVSTSGDMYSFGILMLEMLTGRRPTDEIFEDGQNICNFVAM 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00627 933 Pfam Leucine rich repeat 536 594 IPR001611 GO:0005515
Viun10g00627 933 Pfam Leucine rich repeat 215 275 IPR001611 GO:0005515
Viun10g00627 933 SMART LRR_typ_2 557 580 IPR003591 -
Viun10g00627 933 SMART LRR_typ_2 581 606 IPR003591 -
Viun10g00627 933 SMART LRR_typ_2 484 509 IPR003591 -
Viun10g00627 933 SMART LRR_typ_2 436 460 IPR003591 -
Viun10g00627 933 SMART LRR_typ_2 165 189 IPR003591 -
Viun10g00627 933 SMART LRR_typ_2 262 286 IPR003591 -
Viun10g00627 933 SMART LRR_typ_2 237 261 IPR003591 -
Viun10g00627 933 SUPERFAMILY L domain-like 365 620 - -
Viun10g00627 933 FunFam LRR receptor-like serine/threonine-protein kinase EFR 671 781 - -
Viun10g00627 933 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 67 330 - -
Viun10g00627 933 SUPERFAMILY Protein kinase-like (PK-like) 675 920 IPR011009 -
Viun10g00627 933 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Viun10g00627 933 PRINTS Leucine-rich repeat signature 557 570 - -
Viun10g00627 933 PRINTS Leucine-rich repeat signature 463 476 - -
Viun10g00627 933 SMART serkin_6 700 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00627 933 Gene3D Ribonuclease Inhibitor 321 639 IPR032675 -
Viun10g00627 933 FunFam LRR receptor-like serine/threonine-protein kinase EFR 331 636 - -
Viun10g00627 933 Pfam Leucine Rich Repeat 463 481 IPR001611 GO:0005515
Viun10g00627 933 Pfam Protein kinase domain 702 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00627 933 Gene3D Ribonuclease Inhibitor 26 308 IPR032675 -
Viun10g00627 933 ProSiteProfiles Protein kinase domain profile. 700 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00627 933 PANTHER OS04G0122200 PROTEIN 212 923 - -
Viun10g00627 933 SUPERFAMILY L domain-like 27 322 - -
Viun10g00627 933 Gene3D Transferase(Phosphotransferase) domain 1 782 933 - -
Viun10g00627 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Viun10g00627 933 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 782 933 - -
Viun10g00627 933 Gene3D Phosphorylase Kinase; domain 1 680 781 - -
Viun10g00627 933 ProSitePatterns Protein kinases ATP-binding region signature. 706 729 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00627 Viun-Chr10 5916373 5920052 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00627 26 921 Receptor kinase-like Gene Family AT3G47570 46.578 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun10g00627 Pkinase 8.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00627 - - vun:114166412 1872.44