Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00625 ATGGCCTCATCCATTCCTTCCATGGAATTCACGTCTTCATCATCCAAACTCCAACAGAGGTACGATGTGCTCATCAACTTTTCTGGAGAGGACATCCGCAAGAAATTTGTTTCTCATCTTGATTCTGCCCTCTCTGCTGTCGGCTTCACCACTTTCTTTCACGAGGAGAACGCAGTGAATGAAATGCACATCCAAGAACCTATTCTCGATCTCTATCAAGTAGCAATTGTTGTCTTCACCAAAACCTATGCTCAATCTGCTTGGTGTCTTCATCAACTTCGGCAAATCATTCGATGGCACCAAACTTATTCCCGGCATCTTCTGCCTATATATTACGAAGTTGAGCCATCTGATGTACGTCTTCAAAAGGGTGATTTTGGAAAAGCCTTCAAAGCAACTGCATATCAAACATTCTCAACACAACAACTGGAGCTTGGCATGTCCAGGTGGAGCCAAGCACTCACCAAAGCTGCAGATTTCTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCTGAATTAGTGGACAAAATTGTTAAGAGCGTCCTTAATTTACCAGTTATGTCTGCTACTAAATTTCCTGTTGGACTACATTCTCGCGTGGAAGATGTGATTCGAACTATCAGAAGTAAATCCACAGAAGTTTGTATAATAGGGATATATGGAGAGGGAGGATCTGGTAAAACCACCCTTGCCACAGCCATCTACAATCAAATTCAGGATACATTCACGAAGAAAAGTTTCATCGAAGGACAAGTTGGCGAAATAAGAGGGGATCTTCGTTTACGAGAACAACTTCTTTTAGACATCCTAAAAGCAAAGGTGGAGATACCTAACGCTGATATTGGAAGAAGTATGATTCGGAAAAGACTTTCTGGAAAAAGGATGCTCATTGTACTTGACGATGTTCCTTACTTTAGTATATTCCTAGATCTATGGGATTACTGTAAATGGTTTGGTGAAGGAACTGTGATAATCGTTACAACAAGATATGAAATCCTAGAACTCAGGAGAGGTCAACCCGATTCTGTCTTTCGGGTAAAGCTAATGAACGAAAAAGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAAGAAGAATACAATGAACTGGCAAAAAGAGTAGTTCATTATTGTGGAGGACTACCTCTAGCTCTTGAAGTCATCGGAAGCTGTTTATTTGAAAGGACCAAAGAAGAATGGCATAGTGTATTGTTTGAATTAGAGAAAATTCCCTCGCACAATGCTGAACAGAAATTGAAAATAGGCTTCGACGGTTTACGCAATCAAATAGAAAAGGATTTATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAGGGCAGAACCTATGCTACGAAGATCCTAAATGGTTGTGGGGTAGACGCTGATAGTGGAATAAGAGTTCTCATAGAACGTAGCCTCATAAAAGTTAAAAAGAACAGGAAATTTGGAATGCATCCTTTGGTAGAAGAAATGGGAAGAGCAATTATTCATGAAATTTCAAGAAATGAGTCTTTGATGGACAACCAACTGTGTGTTGACGATGCAGAATATGTGTTGATAGATAATACAGAAACAAAAGTCTCTCAGGCACTGCTTATGAAACTACGTTCAGCCAGAATAGAACCATCAAGACTGCTGAAACTCGATGGAAATTCAGAGAACACCTCTAAGAAACTGAGAGGGATAAGTTTGCATGGGGTTTCTTCACAATACGTTCCTGACGACTTTTGTCTGCATGATGTAATAGCAATTTATTTAAAGCACTGTTTTCTACGACTCTGGAAACAACCCCAGGTTTTGAGGTGGCTAAAAGTCCTCAATCTTAGTCACTCCAAGTATTTAAGAGAAACTCCTGACTTTTCCGGACTACCAAGTCTTGAACAACTCATTCTTAAAGATTGTCCAAGATTGTGCCAAGTACACAAATCTATCGGATGTCTCTGCTACCTTTTACTGCTAAATTTGAAGGACTGTACGAGTATAAGCAATCTGCCCAAAGGAATATATAAGTTGAAATCTTTAAGAACTCTCATTCTCTCTGGGTGTTCGAAGATTGACCTCATGGAAAAAGATATAGTGCAAATGAAATCCTTGATAACTCTAATTGCTGAAAATGCAGCTGTGAGACAAGTGCCTTTTTCAATTGTAAGCTCAAAAAGCATTGGATATATATCCCTTCTTGGATTTGAGAGATTGCCACATAATCTTTTTTCTTCCATAATTCGGTCTTGGATATCGCCAACAATGAATCCAATATCTAATATTCATTCGTTGTGGATGGATACGGATAATAGTTGGGATGATATTGCGCCATTGCTTAGCTCCCTCGCAAATCTTCGAAGTGTTTTGGTACAATGTGACACCGAGTTTCAACTATCTAAGCAAATAAAAAATGATTTGGTCGAATATTTTTCAAATATTACACACTCAGGAATTTCAAAGCAGCACTTCAGGTGTTCTTTGATTGGTGTTGGAAGATACCATGAATTCTTCAATGCTGTCGGCGATAACATATTTGAGATTTTGGCAAGCAGAGAGTCTTGTGATGTTTTTCTCCCAATTGTAAATGATCCTTATTGTTTGGCCCATATAGGTGAGGGACACTCTGTTTTTTTCACTGTGCCTCGAGATCTTGACATGAAGGGAATGGCTTTGTGTATTTATTTATCAACCCTTGAAATCGTGGTAAGTGAATGTCTTAGAAGTGTCTTAATTGTTAATTACACAAAGTGTACATTCCAAATACACTACCATGACCCAGTAATTTCCTTTAACGACGACGATTGGAATGCCATAAACTCAAATTTAGAATCTGAAGATAAGATCGAGATTTTTGTGAGTTTTGGTCCTGGATTGGTGGTTAAGAACACAGTTGTCTATCTGATCTGTGGTGAATCAAATAACATGGACAAAGAGTCTCTGCCAAAGAAACATTCTCTCATTAGATTCATAAAGAAAATTGTAAAGTGA 2988 0.3879 MASSIPSMEFTSSSSKLQQRYDVLINFSGEDIRKKFVSHLDSALSAVGFTTFFHEENAVNEMHIQEPILDLYQVAIVVFTKTYAQSAWCLHQLRQIIRWHQTYSRHLLPIYYEVEPSDVRLQKGDFGKAFKATAYQTFSTQQLELGMSRWSQALTKAADFFGWDESNHRSDAELVDKIVKSVLNLPVMSATKFPVGLHSRVEDVIRTIRSKSTEVCIIGIYGEGGSGKTTLATAIYNQIQDTFTKKSFIEGQVGEIRGDLRLREQLLLDILKAKVEIPNADIGRSMIRKRLSGKRMLIVLDDVPYFSIFLDLWDYCKWFGEGTVIIVTTRYEILELRRGQPDSVFRVKLMNEKESLELLSWHAFREPKPKEEYNELAKRVVHYCGGLPLALEVIGSCLFERTKEEWHSVLFELEKIPSHNAEQKLKIGFDGLRNQIEKDLFLDVCCFFVGKGRTYATKILNGCGVDADSGIRVLIERSLIKVKKNRKFGMHPLVEEMGRAIIHEISRNESLMDNQLCVDDAEYVLIDNTETKVSQALLMKLRSARIEPSRLLKLDGNSENTSKKLRGISLHGVSSQYVPDDFCLHDVIAIYLKHCFLRLWKQPQVLRWLKVLNLSHSKYLRETPDFSGLPSLEQLILKDCPRLCQVHKSIGCLCYLLLLNLKDCTSISNLPKGIYKLKSLRTLILSGCSKIDLMEKDIVQMKSLITLIAENAAVRQVPFSIVSSKSIGYISLLGFERLPHNLFSSIIRSWISPTMNPISNIHSLWMDTDNSWDDIAPLLSSLANLRSVLVQCDTEFQLSKQIKNDLVEYFSNITHSGISKQHFRCSLIGVGRYHEFFNAVGDNIFEILASRESCDVFLPIVNDPYCLAHIGEGHSVFFTVPRDLDMKGMALCIYLSTLEIVVSECLRSVLIVNYTKCTFQIHYHDPVISFNDDDWNAINSNLESEDKIEIFVSFGPGLVVKNTVVYLICGESNNMDKESLPKKHSLIRFIKKIVK 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00625 995 Gene3D - 349 433 IPR042197 -
Viun10g00625 995 SUPERFAMILY L domain-like 556 790 - -
Viun10g00625 995 CDD AAA 195 338 - -
Viun10g00625 995 SUPERFAMILY "Winged helix" DNA-binding domain 425 506 IPR036390 -
Viun10g00625 995 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Viun10g00625 995 Gene3D Ribonuclease Inhibitor 520 828 IPR032675 -
Viun10g00625 995 Gene3D - 18 180 IPR035897 -
Viun10g00625 995 Pfam NB-ARC domain 200 416 IPR002182 GO:0043531
Viun10g00625 995 Pfam TIR domain 21 183 IPR000157 GO:0007165
Viun10g00625 995 Gene3D - 181 337 IPR027417 -
Viun10g00625 995 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 724 IPR044974 GO:0006952
Viun10g00625 995 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Viun10g00625 995 SMART till_3 20 160 IPR000157 GO:0007165
Viun10g00625 995 PRINTS Disease resistance protein signature 217 232 - -
Viun10g00625 995 PRINTS Disease resistance protein signature 675 691 - -
Viun10g00625 995 PRINTS Disease resistance protein signature 384 398 - -
Viun10g00625 995 PRINTS Disease resistance protein signature 290 304 - -
Viun10g00625 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 443 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00625 Viun-Chr10 5891541 5895651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00625 6 748 WRKY Transcription Factor Family AT4G12020 26.403 4.23e-50 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00625 - - vun:114165880 1242.64