Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00624 ATGACCTCTCATCAATTCCTTTCCATGGATAATTCCTCCTCTTCATACAAACTCCCAGAGAAGTACGATGTGCTCATCAACTTTACTGGAGACGACATCCACAGAAAATTTGTTTCTCATCTCGACTCTGTCCTCACTTCTGTTGGAATCTCCACTTTCCTTCACCACCAGAATTCAGTGAAGGCAACTCACATCCAACAACCTATTCTCAAGAACTGTCGGGTAGCCATTGTTGTTTTCACCCAAACCTATTCTCAATCTGCTTGGTGTCTTAATCAGCTTCAACAAATAATCAAATGGCATGAAACTTATCTCCGACATGTTCTGCCCGTATATTACGAAATCCAGCCATCTGATGTACGTCTTCAGAAAGGTGATTTTGGAAAAGCCTTGAAGGCAACTGCACAACAAACATTTTCAGGACAACAACTGGAGGATGCCATGTCCAGGTGGAGCTATGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGACGAGAATAATCACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGAGCCTTCTTAATTTACCAGTCCTGTCAGCTACTAGATTTCCAGTTGGATTACAATCTCACGTGGAAGATCTGATTCGAACTATAAATAGTAAATCCAGGGAAGTTTGTACAATAAGGATATGTGGACAGGGAGGCTCTGGTAAAACCACCCTTGCTAAAGCCATCTACCATCAAATTCAATGTAAATTCAGGATGAAAAGTTTCATTGAAGATATTGAACAACTTAGCGGAACAAGAAGGGATCTTCGTTTACAAGAACAACTTCTTTTAGATGTCCTAAAAACAAAGGTAGAGATACCTAGCGTTGATGTGGGGAGAACTATGATTCAGGAAAGACTTTCTGGGAAAAGGGTGCTAATTGTACTTGACCATGTGTATTACTTTTGTGAACTTTTAAACCTACTGAAATATCGTCATTCGTTCAGTGAAGGAACTGTAATAATCATTACAGCAGAAAAGGAAATGCTACTGGGTGAATATCAAACTGAAACTGTTTTTTGGGTAGAGCAAATGGACATAAATGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAATACAAGAATACGACGACCTTGCAAAACAAGTAGTTAATTATTGTGGAGGACTACCTCTAACTCTTGAACTCATTGGAAGTAGTTTATTTGAAAGGACGAAAGAAGAATGGCAACGTGTAATTTTTGGATTAGAGGACACTCGCAAAGGCTATGTTACGAAGATCCTAAATGGCTGGGGAGTAAACGCTGATATTGGAATAAGAGTTCTCATGGAGCGCAACCTCATAAAAATTAAGAAGAACAACAAATTGGGAATGCATCCTTTGCTACAACAAATGGGAATAACAATTTCTGTAAAGGAACCTGGGAAGAACAGGCGACTCTGGTTTGATAAGGATAAAAAATATGGAACACAAAACATGCAGTGGTTGCCCGTGGAAGATCCCTTCAGAAGAGTACACCCGACAGAAAATTCTCAGTACCGTCATAAAAAACTAGGATGGATCAGTTCTTTGCTCTTTTCATCACAGGGGACAAAAGCCAATAAGAGGTTTTCTCCGAAACGGGATGAAGTAGGAATGTCTGTAAATTCTGAATACCTTTTACAGAAACTGAAATGGACCATTGTGCATGGGTTTCCGTCAGAATACCTTCATAGAAAATTTTATGTGCATGATGCAATAGGGATTGATTTAAAACACAGTCTTCTTCGACTCGTCTGGAAAAAACCACAGGTTTTAAGGTGGCTAAAAGTCCTTAATCTTAGTCACTCCAAGTATTTAAAAGAAACTCCCGACTTTTCCGGATTACCAAGTCTTGAACAACTCATTTTGAAACATTGTTCAAGATTGCGCAAAGTACACCGATCTATTGGATCACTCAACAATCTTATACTGCTAAATTTGAAAGACTGTACAAGTCTAAGCAATCTCCCAAGAGAGATATTTGAGTTGAAATCTTTAAGAACTCTCATTCTCTCTGGTTGTTCCATGATTGACCAAATGGAAAATGATTTAGTGCAGATGGAATCCTTGATAACTCTAATTGCTGAAAATACAGCTGTGAAAGAAGTGCCTTTTTCAATTGTAAGCTCAAGAAGCATTGGATACATATCCCTACATCGATTTGAGGGATTATCAAGTAATCTTTTTCCTTCTATCATTGGGTCTTGGATGTCGCCAACGATGAATCCCATATCTTGTATTCATTCGTTTTGCATGGATATGGCGGATAATAGTTGGGATGATATGGCACCATTGCTAAGCACCCTTGCCAATCTTCGAAGTGTTTTGGTAGCATGTGACACCGAGTTTCAATTATCTGAGCAAGTGAAAAATATTTTGGTCGAATATTTTGCGAATATTACAGAAGCAGGAATTTCAAAGCAGCACTTCAGGTGTTCTTTGATTGGTGTTGGAGCATACCATCAATTCTTCAATGCTGTCGGCGATAACATATATGAGGTATTGGCAAGCAGTGAGTCTTGTGATGTTTCTCTCCCAGTTGTCAATGATCCTTATTGTTTGGCGCATATGGGTGAGGGACACTCTGTTTCCTTCACTGTGCCTCAAGATTGTGACATGAAGGGAATGGTTTTATGTGTTGTTTATTTATCAACTCCTAAAATCATTGAACCTGAATTTACTACTGTCTTAATTGTTAATTACTCAAAGTGCACATTCCAGATACACAACCATGGCACAATAATTTGCTTTAATGATGAAGATTGGCATGGTATAATGTCAAACTTAGAATCTGGAGACACGGTGGAGATTTTTGTGAATTTTGGTAATGGATTGGTGGTCAAGAACACAGCTGTTTATCTGATATGTGGTGAATCAAAGAACATGGAAAAAGCGTCTGAGCCAAAACATTCTCTCATTAGATTCATAAAGAAAGTTGTAATGTGA 2964 0.3873 MTSHQFLSMDNSSSSYKLPEKYDVLINFTGDDIHRKFVSHLDSVLTSVGISTFLHHQNSVKATHIQQPILKNCRVAIVVFTQTYSQSAWCLNQLQQIIKWHETYLRHVLPVYYEIQPSDVRLQKGDFGKALKATAQQTFSGQQLEDAMSRWSYALTKAANFFGWDENNHRSDAELVDKIVKSLLNLPVLSATRFPVGLQSHVEDLIRTINSKSREVCTIRICGQGGSGKTTLAKAIYHQIQCKFRMKSFIEDIEQLSGTRRDLRLQEQLLLDVLKTKVEIPSVDVGRTMIQERLSGKRVLIVLDHVYYFCELLNLLKYRHSFSEGTVIIITAEKEMLLGEYQTETVFWVEQMDINESLELLSWHAFREAKPIQEYDDLAKQVVNYCGGLPLTLELIGSSLFERTKEEWQRVIFGLEDTRKGYVTKILNGWGVNADIGIRVLMERNLIKIKKNNKLGMHPLLQQMGITISVKEPGKNRRLWFDKDKKYGTQNMQWLPVEDPFRRVHPTENSQYRHKKLGWISSLLFSSQGTKANKRFSPKRDEVGMSVNSEYLLQKLKWTIVHGFPSEYLHRKFYVHDAIGIDLKHSLLRLVWKKPQVLRWLKVLNLSHSKYLKETPDFSGLPSLEQLILKHCSRLRKVHRSIGSLNNLILLNLKDCTSLSNLPREIFELKSLRTLILSGCSMIDQMENDLVQMESLITLIAENTAVKEVPFSIVSSRSIGYISLHRFEGLSSNLFPSIIGSWMSPTMNPISCIHSFCMDMADNSWDDMAPLLSTLANLRSVLVACDTEFQLSEQVKNILVEYFANITEAGISKQHFRCSLIGVGAYHQFFNAVGDNIYEVLASSESCDVSLPVVNDPYCLAHMGEGHSVSFTVPQDCDMKGMVLCVVYLSTPKIIEPEFTTVLIVNYSKCTFQIHNHGTIICFNDEDWHGIMSNLESGDTVEIFVNFGNGLVVKNTAVYLICGESKNMEKASEPKHSLIRFIKKVVM 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00624 987 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 707 IPR044974 GO:0006952
Viun10g00624 987 PRINTS Disease resistance protein signature 386 400 - -
Viun10g00624 987 PRINTS Disease resistance protein signature 218 233 - -
Viun10g00624 987 PRINTS Disease resistance protein signature 667 683 - -
Viun10g00624 987 PRINTS Disease resistance protein signature 293 307 - -
Viun10g00624 987 ProSiteProfiles TIR domain profile. 20 187 IPR000157 GO:0007165
Viun10g00624 987 Gene3D Ribonuclease Inhibitor 566 818 IPR032675 -
Viun10g00624 987 Gene3D - 182 346 IPR027417 -
Viun10g00624 987 SUPERFAMILY L domain-like 562 779 - -
Viun10g00624 987 Gene3D - 16 181 IPR035897 -
Viun10g00624 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 426 IPR027417 -
Viun10g00624 987 Gene3D - 352 429 IPR042197 -
Viun10g00624 987 SMART till_3 21 161 IPR000157 GO:0007165
Viun10g00624 987 Pfam TIR domain 21 183 IPR000157 GO:0007165
Viun10g00624 987 Pfam NB-ARC domain 199 425 IPR002182 GO:0043531
Viun10g00624 987 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 164 IPR035897 -
Viun10g00624 987 Coils Coil 683 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00624 Viun-Chr10 5846628 5850623 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00624 11 713 WRKY Transcription Factor Family AT4G12020 25.296 5.21e-49 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00624 - - var:108346736 1231.85