Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00623 ATGACCTCTCATCAATTCCTTTCCATGGATAATTCCTCCTCTTCATACAAACTCCCAGAGAAGTACGATGTGCTCATCAACTTTACTGGAGACGACATCCACAGAAAATTTGTTTCTCATCTCGACTCTGTCCTCACTTCTGTTGGAATCTCCACTTTCCTTCACCACCAGAATTCAGTGAAGGCAACTCACATCCAACAACCTATTCTCAAGAACTGTCGGGTAGCCATTGTTGTTTTCACCCAAACCTATTCTCAATCTGCTTGGTGTCTTAATCAGCTTCAACAAATAATCAAATGGCATGAAACTTATCTCCGACATGTTCTGCCCGTATATTACGAAATCCAGCCATCTGATGTACGTCTTCAGAAAGGTGATTTTGGAAAAGCCTTGAAGGCAACTGCACAACAAACATTTTCAGGACAACAACTGGAGGATGCCATGTCCAGGTGGAGCTATGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGACGAGAATAATCACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGAGCCTTCTTAATTTACCAGTCCTGTCAGCTACTAGATTTCCAGTTGGATTACAATCTCACGTGGAAGATCTGATTCGAACTATAAATAGTAAATCCAGGGAAGTTTGTACAATAAGGATATGTGGACAGGGAGGCTCTGGTAAAACCACCCTTGCTAAAGCCATCTACCATCAAATTCAATGTAAATTCAGGATGAAAAGTTTCATTGAAGATATTGAACAACTTAGCGGAACAAGAAGGGATCTTCGTTTACAAGAACAACTTCTTTTAGATGTCCTAAAAACAAAGGTAGAGATACCTAGCGTTGATGTGGGGAGAACTATGATTCAGGAAAGACTTTCTGGGAAAAGGGTGCTAATTGTACTTGACCATGTGTATTACTTTTGTGAACTTTTAAACCTACTGAAATATCGTCATTCGTTCAGTGAAGGAACTGTAATAATCATTACAGCAGAAAAGGAAATGCTACTGGGTGAATATCAAACTGAAACTGTTTTTTGGGTAGAGCAAATGGACATAAATGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAATACAAGAATACGACGACCTTGCAAAACAAGTAGTTAATTATTGTGGAGGACTACCTCTAACTCTTGAACTCATTGGAAGTAGTTTATTTGAAAGGACGAAAGAAGAATGGCAACGTGTAATTTTTGGATTAGAGGACACTCGCAAGTATGCTGTTCAACAGAAATTTGAAGTTATCTTCCACGCTTTACTCAATGAAATGGAAAAAAATTTATTCCTAGATGTATGTTGTTTCTTTGTTGGTAAGGGCAGAGGCTATGTTACGAAGATCCTAAATGGCTGGGGAGTAAACGCTGATATTGGAATAAGAGTTCTCATGGAGCGCAACCTCATAAAAATTAAGAAGAACAACAAATTGGGAATGCATCCTTTGCTACAACAAATGGGAATAACAATTTCTGTAAAGGAACCTGGGAAGAACAGGCGACTCTGGTTTGATAAGGATAAAAAATATGGAACACAAAACATGCAGTGGTTGCCCGTGGAAGATCCCTTCAGAAGAGTACACCCGACAGAAAATTCTCAGTACCGTCATAAAAAACTAGGATGGATCAGTTCTTTGCTCTTTTCATCACAGGGGACAAAAGCCAATAAGAGGTTTTCTCCGAAACGGGATGAAGTAGGAATGTCTGTAAATTCTGAATACCTTTTACAGAAACTGAAATGGACCATTGTGCATGGGTTTCCGTCAGAATACCTTCATAGAAAATTTTATGTGCATGATGCAATAGGGATTGATTTAAAACACAGTCTTCTTCGACTCGTCTGGAAAAAACCACAGGTTTTAAGGTGGCTAAAAGTCCTTAATCTTAGTCACTCCAAGTATTTAAAAGAAACTCCCGACTTTTCCGGATTACCAAGTCTTGAACAACTCATTTTGAAACATTGTTCAAGATTGCGCAAAGTACACCGATCTATTGGATCACTCAACAATCTTATACTGCTAAATTTGAAAGACTGTACAAGTCTAAGCAATCTCCCAAGAGAGATATTTGAGTTGAAATCTTTAAGAACTCTCATTCTCTCTGGTTGTTCCATGATTGACCAAATGGAAAATGATTTAGTGCAGATGGAATCCTTGATAACTCTAATTGCTGAAAATACAGCTGTGAAAGAAGTGCCTTTTTCAATTGTAAGCTCAAGAAGCATTGGATACATATCCCTACATCGATTTGAGGGATTATCAAGTAATCTTTTTCCTTCTATCATTGGGTCTTGGATGTCGCCAACGATGAATCCCATATCTTGTATTCATTCGTTTTGCATGGATATGGCGGATAATAGTTGGGATGATATGGCACCATTGCTAAGCACCCTTGCCAATCTTCGAAGTGTTTTGGTAGCATGTGACACCGAGTTTCAATTATCTGAGCAAGTGAAAAATATTTTGGTCGAATATTTTGCGAATATTACAGAAGCAGGAATTTCAAAGCAGCACTTCAGGTGTTCTTTGATTGGTGTTGGAGCATACCATCAATTCTTCAATGCTGTCGGCGATAACATATATGAGGTATTGGCAAGCAGTGAGTCTTGTGATGTTTCTCTCCCAGTTGTCAATGATCCTTATTGTTTGGCGCATATGGGTGAGGGACACTCTGTTTCCTTCACTGTGCCTCAAGATTGTGACATGAAGGGAATGGTTTTATGTGTTGTTTATTTATCAACTCCTAAAATCATTGAACCTGAATTTACTACTGTCTTAATTGTTAATTACTCAAAGTGCACATTCCAGATACACAACCATGGCACAATAATTTGCTTTAATGATGAAGATTGGCATGGTATAATGTCAAACTTAGAATCTGGAGACACGGTGGAGATTTTTGTGAATTTTGGTAATGGATTGGTGGTCAAGAACACAGCTGTTTATCTGATATGTGGTGAATCAAAGAACATGGAAAAAGCGTCTGAGCCAAAACATTCTCTCATTAGATTCATAAAGAAAGTTGTAATGTGA 3069 0.3855 MTSHQFLSMDNSSSSYKLPEKYDVLINFTGDDIHRKFVSHLDSVLTSVGISTFLHHQNSVKATHIQQPILKNCRVAIVVFTQTYSQSAWCLNQLQQIIKWHETYLRHVLPVYYEIQPSDVRLQKGDFGKALKATAQQTFSGQQLEDAMSRWSYALTKAANFFGWDENNHRSDAELVDKIVKSLLNLPVLSATRFPVGLQSHVEDLIRTINSKSREVCTIRICGQGGSGKTTLAKAIYHQIQCKFRMKSFIEDIEQLSGTRRDLRLQEQLLLDVLKTKVEIPSVDVGRTMIQERLSGKRVLIVLDHVYYFCELLNLLKYRHSFSEGTVIIITAEKEMLLGEYQTETVFWVEQMDINESLELLSWHAFREAKPIQEYDDLAKQVVNYCGGLPLTLELIGSSLFERTKEEWQRVIFGLEDTRKYAVQQKFEVIFHALLNEMEKNLFLDVCCFFVGKGRGYVTKILNGWGVNADIGIRVLMERNLIKIKKNNKLGMHPLLQQMGITISVKEPGKNRRLWFDKDKKYGTQNMQWLPVEDPFRRVHPTENSQYRHKKLGWISSLLFSSQGTKANKRFSPKRDEVGMSVNSEYLLQKLKWTIVHGFPSEYLHRKFYVHDAIGIDLKHSLLRLVWKKPQVLRWLKVLNLSHSKYLKETPDFSGLPSLEQLILKHCSRLRKVHRSIGSLNNLILLNLKDCTSLSNLPREIFELKSLRTLILSGCSMIDQMENDLVQMESLITLIAENTAVKEVPFSIVSSRSIGYISLHRFEGLSSNLFPSIIGSWMSPTMNPISCIHSFCMDMADNSWDDMAPLLSTLANLRSVLVACDTEFQLSEQVKNILVEYFANITEAGISKQHFRCSLIGVGAYHQFFNAVGDNIYEVLASSESCDVSLPVVNDPYCLAHMGEGHSVSFTVPQDCDMKGMVLCVVYLSTPKIIEPEFTTVLIVNYSKCTFQIHNHGTIICFNDEDWHGIMSNLESGDTVEIFVNFGNGLVVKNTAVYLICGESKNMEKASEPKHSLIRFIKKVVM 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00623 1022 Gene3D - 352 434 IPR042197 -
Viun10g00623 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 445 IPR027417 -
Viun10g00623 1022 SUPERFAMILY "Winged helix" DNA-binding domain 428 519 IPR036390 -
Viun10g00623 1022 Pfam NB-ARC domain 199 428 IPR002182 GO:0043531
Viun10g00623 1022 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 164 IPR035897 -
Viun10g00623 1022 ProSiteProfiles TIR domain profile. 20 187 IPR000157 GO:0007165
Viun10g00623 1022 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 742 IPR044974 GO:0006952
Viun10g00623 1022 SUPERFAMILY L domain-like 597 814 - -
Viun10g00623 1022 Gene3D Ribonuclease Inhibitor 601 853 IPR032675 -
Viun10g00623 1022 SMART till_3 21 161 IPR000157 GO:0007165
Viun10g00623 1022 Gene3D - 182 346 IPR027417 -
Viun10g00623 1022 Gene3D - 16 181 IPR035897 -
Viun10g00623 1022 PRINTS Disease resistance protein signature 293 307 - -
Viun10g00623 1022 PRINTS Disease resistance protein signature 386 400 - -
Viun10g00623 1022 PRINTS Disease resistance protein signature 702 718 - -
Viun10g00623 1022 PRINTS Disease resistance protein signature 218 233 - -
Viun10g00623 1022 Pfam TIR domain 21 183 IPR000157 GO:0007165
Viun10g00623 1022 Coils Coil 718 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00623 Viun-Chr10 5846628 5850623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00623 11 748 WRKY Transcription Factor Family AT4G12020 25.921 1.07e-55 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00623 - - vun:114166214 1267.29