Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00620 ATGGCCTCATCAATTCCTTCCATGGAATTCGCGTCTTCGTCATCCAAACGCCAACGAAGATATGATGTGCTAATCAACTTTAGTGGAGAAGACATCCGCAAGAAATTTGTCTCTCATCTCGATTCTGCCCTCTCTGCCGTTGGACTCACCACTATCCATCACCACCACAATGCAGTGCATATCCAACAACCTATTCTCAAACTTTGTCGGGTAGCAATTGTTGTTTTCACCCAAACATATTCTGAATCTGCTTGGTGTCTTCATCAACTTCAACAAATCATTCAATGGCACGAAACTTATTGCCAACATGTTCTGCCCGTATATTACGAAATTCGGCCATCTGATGTACGACTTCAGAAGGGTAATTTTGGAGAAACCTTGAAGGCAACTGCACAACAAGCATTTTCAGGACAACAACTGGAGCATGGCATGTCCATGTGGAACCTTGCACTCACCAAAGCTGCAAATTTGTTTGGATGGGATGATAGCAATTACAGGAGTGATGCTGAAGTAGTGGACAATATTGTTAAGACCGTTCTTCATTTACCAGCCTTGTCTGCTACTAAATTTCCTGTTGGATTACAGTCCCACATGGAAGATCTTATTCAAACTATCAAAAACAAATCCTCAGAAGTTTGTATAATAGGGATATATGGAGGGGGAGGATTGGGTAAAACCACCCTTGCCAAAGCCATCTACCATCAAATTCATGGTACATTTAAGGAGAAATGTTTCATTGAAGATGTTGCACAAGTTAGTAAAATAAGAGGGCATGCTCATTTACAAGAACAACTTCTTTCAAATGTTCTAAAAACAAAGGTGGAGATACATAGCGTTGAGATGGGTGGCAGAATGATTCGGGAAAGTCTTTCTGGGAAAAGGGTGCTCATTGTACTTGACGATATGAATGAGTATAGTACTCTTTTAGACTTATGCAGATGTCGTGCAAGGTTCAGTGAAGGAACTGTGATAATTATTACAACAACAAACGAAGGCCTACTGATAAGACATCCAGTTGATTCTGTATTTCGGATAGAGCGAATGAATGCAAAGGAGTCCCTTGAGCTTCTTAGCTGGCACGCATTTAGGGAAGCAAAACCAAAAGAAGATTACAATGACCTTGCAAGAAAAGTAGTTACTTATTCTGGAGAACTACCTCTACTTCTTGAAGTCACTGGAAGTAGTTTATTTGAAAGGACGAAACGAGAATGGAATGGTGTATTGTTTGAATTTGCAAAACGTCCCCAAAACAATGTTCCTCGGAAATTGAAAATAAGCTTCGATGTTTTATGCAATCAAATAGAAAAAGATTTATTCCTTGATGTATGTCGTTTCTTTGTTGGTAAGGGCAGAGTTTATGCTACAAACATCCTAAATGGCTTCGGAGTAGATGTTGATAATGGAATAAGAGTTCTCACAGAGCGTAGCCTCATACAAGTTGAAAAGAATAACAAATTAGGAATGCATTCGTTGCTACGAGAAATGGGAAGAGAAATTATTCGTGAAATTACAGGAAAGGAACCTGGGAAGATTAGTCAACTGTGGCTTGATAAGGATGTAGAATATGTACTGACAGAGAATACTTTCTTTTCATCGCAACGGACAAAAGTCATTCAGAGATTGCCTGTGAAAATGCTTTTAAACATGAGAGATTTCTTCGATCCTTATCCAGAGGTAAGAGAGCCACTGCTGAAACTCACTGAAAATTCCGAGTACCTTTCTAAGAAACTGAGATGGATCAGTTTGCAAGGATTTTCTTCAAAATACCTACCCAACGACTTTTATCTGCATGACGCAATGGTGATTGATTTAAAGCATAGTCTTCTTCGAGTCGTCTGGAAAGAAACCCAGATTTTGAGGTCGCTAAAAGTCCTTAACTTAAGCCACTCCATGCACTTGATAGAAACACCTGACTTTTCAAGAATACAATGTCTTGAACAGCTTATTCTAAAAGATTGTCCGAGATTGCGCAAAGTACACCAATCTATTGGATGTCTCTACAATCTTATACTGCTAAATTTGAAGGATTGTACAAGTCTAAGAAATCTCCCCGTAGGGATATATATGTTGAAATCTTTAAGAACTCTCATTCTTTCTGGTTGTTCCAAGATTGACCTATCGGAAAAGGATATAGTCCTATGA 2142 0.3903 MASSIPSMEFASSSSKRQRRYDVLINFSGEDIRKKFVSHLDSALSAVGLTTIHHHHNAVHIQQPILKLCRVAIVVFTQTYSESAWCLHQLQQIIQWHETYCQHVLPVYYEIRPSDVRLQKGNFGETLKATAQQAFSGQQLEHGMSMWNLALTKAANLFGWDDSNYRSDAEVVDNIVKTVLHLPALSATKFPVGLQSHMEDLIQTIKNKSSEVCIIGIYGGGGLGKTTLAKAIYHQIHGTFKEKCFIEDVAQVSKIRGHAHLQEQLLSNVLKTKVEIHSVEMGGRMIRESLSGKRVLIVLDDMNEYSTLLDLCRCRARFSEGTVIIITTTNEGLLIRHPVDSVFRIERMNAKESLELLSWHAFREAKPKEDYNDLARKVVTYSGELPLLLEVTGSSLFERTKREWNGVLFEFAKRPQNNVPRKLKISFDVLCNQIEKDLFLDVCRFFVGKGRVYATNILNGFGVDVDNGIRVLTERSLIQVEKNNKLGMHSLLREMGREIIREITGKEPGKISQLWLDKDVEYVLTENTFFSSQRTKVIQRLPVKMLLNMRDFFDPYPEVREPLLKLTENSEYLSKKLRWISLQGFSSKYLPNDFYLHDAMVIDLKHSLLRVVWKETQILRSLKVLNLSHSMHLIETPDFSRIQCLEQLILKDCPRLRKVHQSIGCLYNLILLNLKDCTSLRNLPVGIYMLKSLRTLILSGCSKIDLSEKDIVL 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00620 713 Gene3D - 13 180 IPR035897 -
Viun10g00620 713 SUPERFAMILY L domain-like 563 706 - -
Viun10g00620 713 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 706 IPR044974 GO:0006952
Viun10g00620 713 SMART AAA_5 211 349 IPR003593 GO:0016887
Viun10g00620 713 Gene3D Ribonuclease Inhibitor 561 710 IPR032675 -
Viun10g00620 713 SUPERFAMILY "Winged helix" DNA-binding domain 422 524 IPR036390 -
Viun10g00620 713 Gene3D - 347 431 IPR042197 -
Viun10g00620 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 441 IPR027417 -
Viun10g00620 713 PRINTS Disease resistance protein signature 214 229 - -
Viun10g00620 713 PRINTS Disease resistance protein signature 289 303 - -
Viun10g00620 713 PRINTS Disease resistance protein signature 382 396 - -
Viun10g00620 713 PRINTS Disease resistance protein signature 688 704 - -
Viun10g00620 713 Pfam NB-ARC domain 195 419 IPR002182 GO:0043531
Viun10g00620 713 SMART till_3 20 157 IPR000157 GO:0007165
Viun10g00620 713 ProSiteProfiles TIR domain profile. 19 183 IPR000157 GO:0007165
Viun10g00620 713 Gene3D - 181 339 IPR027417 -
Viun10g00620 713 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 160 IPR035897 -
Viun10g00620 713 Pfam TIR domain 21 186 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00620 Viun-Chr10 5816965 5820559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00620 6 704 WRKY Transcription Factor Family AT4G12020 28.142 1.33e-65 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00620 - - vun:114165880 886.33