Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00618 ATGGCCTCATCAATTCCTTCCATGGAATTCGCGTCTTCGTCATCCAAACGCCAACGAAGATATGATGTGCTAATCAACTTTAGTGGAGAAGACATCCGCAAGAAATTTGTCTCTCATCTCGATTCTGCCCTCTCTGCCGTTGGACTCACCACTATCCATCACCACCACAATGCAGTGCATATCCAACAACCTATTCTCAAACTTTGTCGGGTAGCAATTGTTGTTTTCACCCAAACATATTCTGAATCTGCTTGGTGTCTTCATCAACTTCAACAAATCATTCAATGGCACGAAACTTATTGCCAACATGTTCTGCCCGTATATTACGAAATTCGGCCATCTGATGTACGACTTCAGAAGGGTAATTTTGGAGAAACCTTGAAGGCAACTGCACAACAAGCATTTTCAGGACAACAACTGGAGCATGGCATGTCCATGTGGAACCTTGCACTCACCAAAGCTGCAAATTTGTTTGGATGGGATGATAGCAATTACAGGAGTGATGCTGAAGTAGTGGACAATATTGTTAAGACCGTTCTTCATTTACCAGCCTTGTCTGCTACTAAATTTCCTGTTGGATTACAGTCCCACATGGAAGATCTTATTCAAACTATCAAAAACAAATCCTCAGAAGTTTGTATAATAGGGATATATGGAGGGGGAGGATTGGGTAAAACCACCCTTGCCAAAGCCATCTACCATCAAATTCATGGTACATTTAAGGAGAAATGTTTCATTGAAGATGTTGCACAAGTTAGTAAAATAAGAGGGCATGCTCATTTACAAGAACAACTTCTTTCAAATGTTCTAAAAACAAAGGTGGAGATACATAGCGTTGAGATGGGTGGCAGAATGATTCGGGAAAGTCTTTCTGGGAAAAGGGTGCTCATTGTACTTGACGATATGAATGAGTATAGTACTCTTTTAGACTTATGCAGATGTCGTGCAAGGTTCAGTGAAGGAACTGTGATAATTATTACAACAACAAACGAAGGCCTACTGATAAGACATCCAGTTGATTCTGTATTTCGGATAGAGCGAATGAATGCAAAGGAGTCCCTTGAGCTTCTTAGCTGGCACGCATTTAGGGAAGCAAAACCAAAAGAAGATTACAATGACCTTGCAAGAAAAGTAGTTACTTATTCTGGAGAACTACCTCTACTTCTTGAAGTCACTGGAAGTAGTTTATTTGAAAGGACGAAACGAGAATGGAATGGTGTATTGTTTGAATTTGCAAAACGTCCCCAAAACAATGTTCCTCGGAAATTGAAAATAAGCTTCGATGTTTTATGCAATCAAATAGAAAAAGATTTATTCCTTGATGTATGTCGTTTCTTTGTTGGTAAGGGCAGAGTTTATGCTACAAACATCCTAAATGGCTTCGGAGTAGATGTTGATAATGGAATAAGAGTTCTCACAGAGCGTAGCCTCATACAAGTTGAAAAGAATAACAAATTAGGAATGCATTCGTTGCTACGAGAAATGGGAAGAGAAATTATTCGTGAAATTACAGGAAAGGAACCTGGGAAGATTAGTCAACTGTGGCTTGATAAGGATGTAGAATATGTACTGACAGAGAATACTGTATTGGCAAGCAGTGAGTCTTATGATATTTCTCTCCCAGTTGTCAATGATCCTTATTGTTTGGTCCATATGGGCGAGGGACATTCTATTTTTTTCACTGTGCCTCGTGATCTTGAGATGAAGGGAATGACTTTGTGTGTTGTTTATTTATCAACCCCTATGATCTTTGAACCTGAAGTTTCTACTATCTCAATTGTTAATTACACAAAGTGTACATGCCAGATACACAAGCATGACCCAATAATTTCCTTTAATGATGAAGATTGGCATCGAATAGTGTCAAATTTAGGATCTGGAGACAAGGTAGAGATTTTTGTGAGTTTTAGTCATAGATTGGTCGTAAAAAACACAATTGTCTATCTGATATGTGGTGAGTCAAATAACTTAGAAAAAGAGCCTGAACAAATGAAGAATTATCTCAGTAAGTTCATTAGAAAGTTGTAA 2028 0.3856 MASSIPSMEFASSSSKRQRRYDVLINFSGEDIRKKFVSHLDSALSAVGLTTIHHHHNAVHIQQPILKLCRVAIVVFTQTYSESAWCLHQLQQIIQWHETYCQHVLPVYYEIRPSDVRLQKGNFGETLKATAQQAFSGQQLEHGMSMWNLALTKAANLFGWDDSNYRSDAEVVDNIVKTVLHLPALSATKFPVGLQSHMEDLIQTIKNKSSEVCIIGIYGGGGLGKTTLAKAIYHQIHGTFKEKCFIEDVAQVSKIRGHAHLQEQLLSNVLKTKVEIHSVEMGGRMIRESLSGKRVLIVLDDMNEYSTLLDLCRCRARFSEGTVIIITTTNEGLLIRHPVDSVFRIERMNAKESLELLSWHAFREAKPKEDYNDLARKVVTYSGELPLLLEVTGSSLFERTKREWNGVLFEFAKRPQNNVPRKLKISFDVLCNQIEKDLFLDVCRFFVGKGRVYATNILNGFGVDVDNGIRVLTERSLIQVEKNNKLGMHSLLREMGREIIREITGKEPGKISQLWLDKDVEYVLTENTVLASSESYDISLPVVNDPYCLVHMGEGHSIFFTVPRDLEMKGMTLCVVYLSTPMIFEPEVSTISIVNYTKCTCQIHKHDPIISFNDEDWHRIVSNLGSGDKVEIFVSFSHRLVVKNTIVYLICGESNNLEKEPEQMKNYLSKFIRKL 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00618 675 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 572 IPR044974 GO:0006952
Viun10g00618 675 Gene3D - 347 431 IPR042197 -
Viun10g00618 675 SMART AAA_5 211 349 IPR003593 GO:0016887
Viun10g00618 675 Pfam NB-ARC domain 195 419 IPR002182 GO:0043531
Viun10g00618 675 Pfam TIR domain 21 186 IPR000157 GO:0007165
Viun10g00618 675 Gene3D - 13 180 IPR035897 -
Viun10g00618 675 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 441 IPR027417 -
Viun10g00618 675 SMART till_3 20 157 IPR000157 GO:0007165
Viun10g00618 675 ProSiteProfiles TIR domain profile. 19 183 IPR000157 GO:0007165
Viun10g00618 675 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 160 IPR035897 -
Viun10g00618 675 Gene3D - 181 339 IPR027417 -
Viun10g00618 675 PRINTS Disease resistance protein signature 382 396 - -
Viun10g00618 675 PRINTS Disease resistance protein signature 214 229 - -
Viun10g00618 675 PRINTS Disease resistance protein signature 289 303 - -
Viun10g00618 675 SUPERFAMILY "Winged helix" DNA-binding domain 422 524 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00618 Viun-Chr10 5816626 5820559 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00618 6 534 WRKY Transcription Factor Family AT4G12020 26.679 7.04e-49 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00618 - - pvu:PHAVU_010G029000g 706.827