Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00617 ATGGAATTCGTCTCTTCATCGTCCAAACTCCCACGGAATTACGATGTTTTGATCAACTTTACTGGAGAAGACATCCACAGGAAATTTGTTTCTCATCTCGAATTTGCCTTCTCTACGGTTGGGCTCACCACTTTCCTTCACCACCAGAATGCAGTGAAGTCAACGCACATCCAACAACCTATTCTCAACCTCTGTCGGGTAGCGATTGTTGTTTTCACCAAAACCTATTCTCAATCTGCTTGGTGTCTTAATCAGCTTCAACAAATCATCAAATGGCACCAAACTTATTGCCGACATGTTCTGCCCGTATATTACGAAATCCAACCATCTGATGTACGTCTTCAGAAGGGTGATTTTGGGAAAACCTTGAAGGCTACTGCACGACAAACATTTTTAGGGCAACAACTGGAGGATGGCTTGTCGAGATGGAGCCAAGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATCATTGGAGCGATGCTGAACTAGTGGACAACATTGTTAAGAGCGTACTTAATTTACCAGTCCTGTCAGTTACTAAATTTCCAGTTGGATTACAATACCGTGTGCAAGATGTGATTCAAACTATCAAAGATAAATCCGAGGAAGTTTGTATAATAGGGATATGGGGAGAGAGAGGATCTGGTAAAACCACTCTTGCCAGAGCCATCTACCATCAAATTCATGGTACATTCACGGAGAAAAGTTTCGTTGAAGATATCTCAGAAGTTAATCTAACGAGAGGGTATGTTAGTTTACAAAGACAACTTCTTTCAGATGTACTAAAAAGAAAGGTGGAGATACATAGCGTTGAGATGGGAAGAAAAATGACTATGGAAAGACTTTCTGGGAAACGAGTGCTCATTGTACTTGATGATATGAATGAGTATGGTCCATTTTTTGACTTATGCAGATATCGTAAAAGACTCAGTGGAGGAACCGTAATAATCATTACAACAACAGATAGAGACCTATTGGTGAATCATTCAGATTCTGTATTTTCGATACAGCTGATGAACGACATGGAGTCCATTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAACAAGAATACGAAGACTTTGCAAGAAGAGTGGTTAGATATTGTGGAGGACTACCTCTAGCTCTTGAAGTCATTGGAAGTACTTTATTTGAAACGACGGAAGAAGAATGGTGTAGTGTATTGTTTGAATTAGAGGAAAATCCCCAGCATTCTGTTATACATAAATTGAAAATAAGTTTCGACTGTTTACGCAATCAAATGGAAAAAGATTTATTCCTTGATGTATGCTGTTTCTTTGTTGGTAAGGACAGAGCCTATGCTATGAAGATTCTAAATGGCTGTGTAGTAGACGCTGATAGTGGAATAAGAGTCTTGATAGAGCGTAGCCTCATAAAAGTTTCCAAGAACAACAAATTTGGAATGCATCCTTTGCTACGAAAAATGGGAAGACAAATTAGTCTGGATATTTTAGGAAACAAACATGGGAAGAACATTGAACTGTGGTTTGATAAGGATGTAGAATATGCACTGCCACATAATACTCTCCTTTCATCACAGAAGACAGAAGTGATTCAGAGATTGGTTTTAACCTTAAGAGATTTCTCCGAACTTAATCCTTTAGATTTAAGAGACCCACAGACAAAATTCACTGAAGATCCTGACTACCTTTATGAGAAACTGAGATGGATAAGATTGCAAGGGTTTTCTTCAGAATACCTACCTAACGACTATGGTCGGGGTGACACAATAGCGATTGATTTAAAACACAGTCTTCTTCAACGCGTCTGGAAACAACCCCAGGTTTTGAGGTCGCTAAAATTCCTTAATCTTAGTCACTCCATGCACTTGAAAGAAACACCTAACCTTTCAGGGCTACCATGTCTTGAACAGCTCATTCTGAAATGTTGTCCAAAATTGCGAAAAGTACACCAATCTATCGGATGTCTCTGCAATCTTTTACTGCTAAATTTGAAGGACTGTACAAGTCTAAGCAATCTCCCTAGAGGGATATACAAGTCGAAATCTTTAAGAACTCTCATTCTCTCTGGTTGTTCCAAGATTGAGATAATGGATAAAGATATAACGCAGATGGAATCCTTGATAACTCTAATTGCTGAAAATACAGCTGTGAAATCACTTCCTTTTTCAATTGTAAGCTCAAAAAGCATTGGATATATATCAACACATCAATTTGAGGGATTGTCTCGTAGTTTTTTCCTGTTATCATTCGGTCTTGGATGTCGCCAACAATGA 2280 0.389 MEFVSSSSKLPRNYDVLINFTGEDIHRKFVSHLEFAFSTVGLTTFLHHQNAVKSTHIQQPILNLCRVAIVVFTKTYSQSAWCLNQLQQIIKWHQTYCRHVLPVYYEIQPSDVRLQKGDFGKTLKATARQTFLGQQLEDGLSRWSQALTKAANFFGWDESNHWSDAELVDNIVKSVLNLPVLSVTKFPVGLQYRVQDVIQTIKDKSEEVCIIGIWGERGSGKTTLARAIYHQIHGTFTEKSFVEDISEVNLTRGYVSLQRQLLSDVLKRKVEIHSVEMGRKMTMERLSGKRVLIVLDDMNEYGPFFDLCRYRKRLSGGTVIIITTTDRDLLVNHSDSVFSIQLMNDMESIELLSWHAFREAKPKQEYEDFARRVVRYCGGLPLALEVIGSTLFETTEEEWCSVLFELEENPQHSVIHKLKISFDCLRNQMEKDLFLDVCCFFVGKDRAYAMKILNGCVVDADSGIRVLIERSLIKVSKNNKFGMHPLLRKMGRQISLDILGNKHGKNIELWFDKDVEYALPHNTLLSSQKTEVIQRLVLTLRDFSELNPLDLRDPQTKFTEDPDYLYEKLRWIRLQGFSSEYLPNDYGRGDTIAIDLKHSLLQRVWKQPQVLRSLKFLNLSHSMHLKETPNLSGLPCLEQLILKCCPKLRKVHQSIGCLCNLLLLNLKDCTSLSNLPRGIYKSKSLRTLILSGCSKIEIMDKDITQMESLITLIAENTAVKSLPFSIVSSKSIGYISTHQFEGLSRSFFLLSFGLGCRQQ 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00617 759 SUPERFAMILY L domain-like 557 728 - -
Viun10g00617 759 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Viun10g00617 759 PRINTS Disease resistance protein signature 609 625 - -
Viun10g00617 759 PRINTS Disease resistance protein signature 377 391 - -
Viun10g00617 759 PRINTS Disease resistance protein signature 285 299 - -
Viun10g00617 759 PRINTS Disease resistance protein signature 210 225 - -
Viun10g00617 759 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Viun10g00617 759 Gene3D - 343 426 IPR042197 -
Viun10g00617 759 SMART AAA_5 207 344 IPR003593 GO:0016887
Viun10g00617 759 Gene3D Ribonuclease Inhibitor 517 739 IPR032675 -
Viun10g00617 759 SMART till_3 13 153 IPR000157 GO:0007165
Viun10g00617 759 SUPERFAMILY "Winged helix" DNA-binding domain 414 515 IPR036390 -
Viun10g00617 759 Gene3D - 176 341 IPR027417 -
Viun10g00617 759 Gene3D - 7 175 IPR035897 -
Viun10g00617 759 Pfam TIR domain 13 176 IPR000157 GO:0007165
Viun10g00617 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 436 IPR027417 -
Viun10g00617 759 Pfam NB-ARC domain 191 413 IPR002182 GO:0043531
Viun10g00617 759 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 707 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00617 Viun-Chr10 5810725 5814676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00617 12 752 WRKY Transcription Factor Family AT4G12020 25.907 2.76e-55 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00617 - - vun:114165880 961.444