Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00616 ATGGACTTCCCCTCTTCAACATCCAAACTGCCACGGAAGTACGATGTGCTCATCAACTTTACTGGAGAAGACATTCACAGAAAATTTGTTTCTCATCTTCATTATGCCCTCTCTGCTGTTGGACTCACCACTTTCCTTCACCATCAAGATGCAGTGCAACCAATGAACATCCAACAACCTATTCTCAACCTCTGTCGGATAGCAATTGTTGTTTTCACCAAAACATATTCTGAGTCTGCTTGGTGTCTTCATCAACTTCAACAAATCATCAAATGTCACGAAACTTATTGTCAACATGTTCTGCCCGTATATTACGAAATTCAGCCATCTGATGTACGTCTTCAGCAGGGTCGTTTTGGAAAAGCCTTTAAAGAAACTGCACACCAAACATTCTCAGAACAAGAACTGGAGCATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGCTGCAAATTGCTTTGGATATGATGAGCGCAATTACAGGAGTGATGCTGAACTAGTGGAAAAAATTGCTAAGTTCGTTGTTAATTTACCGGTCCTGTCTGCAACTAAATTTCCAGTTGGGTTACAATCCCGAATGGAAGATGTGATTCAAACTATCAAAAATAAATCCACGGAAATTTGTAAAATAGGGATATGCGGAGAGGGAGGATCTGGTAAAACCACTCTTGCCAAAGCCATCTACCATCAAATTCATGATACATTCAAGGAGAAAAGTTTCTTGGAAGATATTAGACAAGTTAGCGGAATAAGAGAAGATCTTCGTCTACAAGAACAACTTCTTTTAGATGTCCTAAAAACAAAGGTGGAGATACCTAGCGTTGATATAGGAAGAAAAATGATTCGAGAAAGACTTTTCGGGAAACGGATGCTCATTGTACTTGATGACTTGCCTGACTTTTGTGAACTTTTAGACATACTGAAATGCAATCATTTGTTCAGTGGAGGAACTGTAATAATCATTACAACAAGAGACGAACACATACTGAGGCAACATGGAATTGATTCTATTTTTCAGAGCAAGCTAATGTATGAAAATGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGGGAAGCAAAACCGAAAAAACCACACTATGAGCATGCAATAGATATAGTTCATTATTGTGGAGGACTACCTCTAGCTCTTGAAGTGATTGGAAGTAGTTTATTTGAAAGAACGGGAAATGAATGGTATTCGATCCTATGCTACGAAGATCCTAAATGGTTGTGGAGTATACGCTGA 1251 0.3965 MDFPSSTSKLPRKYDVLINFTGEDIHRKFVSHLHYALSAVGLTTFLHHQDAVQPMNIQQPILNLCRIAIVVFTKTYSESAWCLHQLQQIIKCHETYCQHVLPVYYEIQPSDVRLQQGRFGKAFKETAHQTFSEQELEHGMSRWSHALTKAANCFGYDERNYRSDAELVEKIAKFVVNLPVLSATKFPVGLQSRMEDVIQTIKNKSTEICKIGICGEGGSGKTTLAKAIYHQIHDTFKEKSFLEDIRQVSGIREDLRLQEQLLLDVLKTKVEIPSVDIGRKMIRERLFGKRMLIVLDDLPDFCELLDILKCNHLFSGGTVIIITTRDEHILRQHGIDSIFQSKLMYENESLELLSWHAFREAKPKKPHYEHAIDIVHYCGGLPLALEVIGSSLFERTGNEWYSILCYEDPKWLWSIR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00616 416 Pfam NB-ARC domain 192 402 IPR002182 GO:0043531
Viun10g00616 416 SMART till_3 13 153 IPR000157 GO:0007165
Viun10g00616 416 Gene3D - 176 337 IPR027417 -
Viun10g00616 416 Pfam TIR domain 13 181 IPR000157 GO:0007165
Viun10g00616 416 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Viun10g00616 416 SMART AAA_5 207 349 IPR003593 GO:0016887
Viun10g00616 416 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 404 IPR044974 GO:0006952
Viun10g00616 416 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Viun10g00616 416 Gene3D - 7 175 IPR035897 -
Viun10g00616 416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 404 IPR027417 -
Viun10g00616 416 Gene3D - 344 407 IPR042197 -
Viun10g00616 416 PRINTS Disease resistance protein signature 285 299 - -
Viun10g00616 416 PRINTS Disease resistance protein signature 210 225 - -
Viun10g00616 416 PRINTS Disease resistance protein signature 378 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00616 Viun-Chr10 5807328 5809044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00616 12 390 WRKY Transcription Factor Family AT4G12020 25.000 1.08e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00616 - - vun:114166214 598.201