Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00613 ATGTCCAGGTGGAGTCATGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTCAAGGAGTTCTTAATTTACCAGTCTTGTCTGCAACTAAATTCCCAGTTGGATTACAATCCCACGTGGAAGATCTGATTCGAATTATAAAAAGTAAATCCATGACAGTTTGTAAAATAGGGATATGTGGAGCGGGAGGATCTGGTAAAACCACCCTTGCTAAAGCCATCTACCATCAAATTCAAGGTACATTCAGGAACAAAAGTTTCATTGAAGATGTTGGACAAGTTGGCGGAATAAGAGGGGATATTCATGTACAAGAAAAACTTCTTTTAGATATTCTGAAAACAAAGGTGAAGATTCCTAGCGATGATGTGGGAAGAACTATGATTTGGGAAAGACTTTATGGGAAAAGGGTGCTCATTGTTGTTGATGATGTGCCTAACTATTTTGAAATTTTAGCACTACGAAATTGTAGTCGTTGGTTCAGTGGAGGATCTGTAATAATGTTTACAGTAAGAGATGAAAGCCTACTGAAGCATTATTTACTTGATTCTGTATATCGGATAGAGCTAATGAACGCAAACAAGTCCCTTGAGCTTCTTAGTTGGCATGCATTTAGAGAAGCAAAACCAAAAGAAGAATACAATGACCTTGCAAAAGCAGTAGTTGCTTATTGCGGAGGATTACCTCTGGCTCTTGAAGTCATTGGAAATAGTTTATTTGAAAGGACGAAAGAAAAATGGAATACTGTTTTATTTGAATTAAAGAAAATTCCTCCGCACAATGTTATAGAGAAATTGAAAATAAGCTTCAATGGTTTACGCAATGAGATGGAAAAAGAATTTTTCCTTGATGTATGTTGTTTCTTTATTGGCAAGGGCATAGCCTATGCTACGAAGATCCTAAATGGTTGTGGAGTAGACGTTGATACTGGAATAAGAGTTCTCATAGAACGTGGCCTCATAAAAGTTAAGAACAACAAATTTGGAATGCATCCTTTGCTACGAGAAATGGGAAGAGAAATTATTTGCGAAATTTCAGGAAAGGAATCTGGGAAGAACAGTGAACTGTGGTTTGATAAGGATGTAGAATATGCACTACCGGATAATACTGTTTTGAGGTCTCTAAAATTCCTTAACCTTAGCCACTCCATGCACTTGACAGAAACACCTGACTTTTCAGGACTACCAACTCTTGAACACCTCATTCTAAAAGATTGTCCGAGATTGTGCAAAGTACACCAATCTATTGGATGTCTACGTAATCTTATACTGCTAAATTTGAAGGACTGTGAATGTTTAAACAATCTCCCCCGTGAGATATATAAGTTGAAATCTTCAAGAACTTTCATTCTCTCTGGTTGTTCCATAATTGACCTAATGGAAAAAGATACAGTGCGAATGAAATCCTTGATAACTGTAATTACAGAAAATACAGTTGTGAAAGAAGTGCCTTTTTCAATGGTAAGCTCAAAACGCATTGGATATATATCTCTACGTGGATTGGAGGGATTGTCACATAATATTTTTCCTTCTATCATTCGGTCTTGGATGTCGCCAACAATGAATTCCATATCTTATGTTCATTCGTTTTGCATGGATATGGAGGATAATAGTTGGGATGATATTGTGCCATTGCTTAGCTCCCTTAAAAATCTTAGAAGTATTCTTGTGCAATGTGACACCGAGTTTCAACTATCTTTGCAATTGGAAACTATTTTGGCTGAATATGGTGTAAATATTATAGAATCAGGAATTTCAAAGCAGCACTTCAGGTCTTCTTTGATTGGTGTTGGAAGATACAATGAATTCTTCAGCACTGTCAGCGATAGCATATCTGAGGTATTAGTAAGTAGTGAGTCTTGTGATGTTTCTCTCGCAGCTGTCAACAATTGTTTGGCGCATATGGGTGAGGGACACTCTGTTTCTTTCACTGTTCCTCGAGATCGTAACTTGAAGGGAATGGCTTTTTGTGTTGTTTATTTATCAACTCCTAAAATCATTGAACCTGAATTTACTACTGTCGTAATTGTTAATTACACAAAGTGTACATGCCACATACACAACCATGGCACAATAATTTCCTTTAGTGATGAAGACTGGCGTGGAATAATGTCAAATTTAGAATATGGAGACAAGGTGGAGATTTTTGTGACTTTTGGTCATGGATTGGTGCTCAAGAACACAGTTGTCTATCTGATATGTGGTAAATCACATAACTTGAAAAAAGAGCCTGAGTCAAAGAAAAATTGTCTCATTAGATTCATAAAGAAAGTTGTAATGTGTGACTTCTGGTAA 2337 0.3688 MSRWSHALTKAANFFGWDESNYRSDAELVDKIVQGVLNLPVLSATKFPVGLQSHVEDLIRIIKSKSMTVCKIGICGAGGSGKTTLAKAIYHQIQGTFRNKSFIEDVGQVGGIRGDIHVQEKLLLDILKTKVKIPSDDVGRTMIWERLYGKRVLIVVDDVPNYFEILALRNCSRWFSGGSVIMFTVRDESLLKHYLLDSVYRIELMNANKSLELLSWHAFREAKPKEEYNDLAKAVVAYCGGLPLALEVIGNSLFERTKEKWNTVLFELKKIPPHNVIEKLKISFNGLRNEMEKEFFLDVCCFFIGKGIAYATKILNGCGVDVDTGIRVLIERGLIKVKNNKFGMHPLLREMGREIICEISGKESGKNSELWFDKDVEYALPDNTVLRSLKFLNLSHSMHLTETPDFSGLPTLEHLILKDCPRLCKVHQSIGCLRNLILLNLKDCECLNNLPREIYKLKSSRTFILSGCSIIDLMEKDTVRMKSLITVITENTVVKEVPFSMVSSKRIGYISLRGLEGLSHNIFPSIIRSWMSPTMNSISYVHSFCMDMEDNSWDDIVPLLSSLKNLRSILVQCDTEFQLSLQLETILAEYGVNIIESGISKQHFRSSLIGVGRYNEFFSTVSDSISEVLVSSESCDVSLAAVNNCLAHMGEGHSVSFTVPRDRNLKGMAFCVVYLSTPKIIEPEFTTVVIVNYTKCTCHIHNHGTIISFSDEDWRGIMSNLEYGDKVEIFVTFGHGLVLKNTVVYLICGKSHNLKKEPESKKNCLIRFIKKVVMCDFW 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00613 778 Gene3D - 205 288 IPR042197 -
Viun10g00613 778 Pfam NB-ARC domain 53 270 IPR002182 GO:0043531
Viun10g00613 778 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 484 IPR044974 GO:0006952
Viun10g00613 778 Gene3D - 1 40 IPR035897 -
Viun10g00613 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 298 IPR027417 -
Viun10g00613 778 SUPERFAMILY L domain-like 380 569 - -
Viun10g00613 778 SUPERFAMILY "Winged helix" DNA-binding domain 276 377 IPR036390 -
Viun10g00613 778 Gene3D - 41 198 IPR027417 -
Viun10g00613 778 PRINTS Disease resistance protein signature 239 253 - -
Viun10g00613 778 PRINTS Disease resistance protein signature 146 160 - -
Viun10g00613 778 PRINTS Disease resistance protein signature 71 86 - -
Viun10g00613 778 PRINTS Disease resistance protein signature 384 400 - -
Viun10g00613 778 Gene3D Ribonuclease Inhibitor 364 583 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00613 Viun-Chr10 5764051 5768064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00613 49 382 WRKY Transcription Factor Family AT5G45050 30.149 2.15e-45 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00613 - - vun:114166214 991.104