Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00612 ATGGCCTCATCAATTCCTTCCATGGAATTCACCGCTTTATCGTCCTCACTCCCACGGAACTACGATGTACTCATCAACTTTACTGGAGAAGACATCCATAGAAAATTTGTTTCTCATCTTGATTCTGCTCTCTCTGCTGTTGGATTCACCACTTTCCTTCATCACCAGAATGCAGTGAAGCCAATGCACATCCAAGAACCTATTGTCAACCTCTGTCGGGTAGCAATTGTTGTTTTTACCAAAACCTATTCTGAGTCTGCTTGGTGTCTTCATCAACTTCAACAAATCGTGAAATGGCACGAAACTTGTTGCCAACACGTTCTGCCTGTATATTACGAAATTGCGCCATCTGATGTACGTCTTCAGCAAGGTGATTTTGGAAAAGCCTTTAAAGCAACTGCACACCAAACATTTTCAGAACAAGAACTGGAGCATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGTTGCAAATTGCTTTGGATGGGATGAGAGCAATTACAGGAGCGATGCTGAAGTAGTGAACAAAATTGTTAAGAGCCTTCTTAATTTATCAGTCTTCTCTGCTACTAAATTTCCAGTTGGATTACAATCCCGCGTGGAAAATGTGATTCGAACTATCAAAAGTAAATCCACAAAAGTTTGTATAATAGGGATATGTGGAAAGGGAGGATCTGGTAAAACCACTCTTGCCAAAGCCATCTACAATCAAATTCAAATTACATTCAGGGACAAAAGTTTCATTGAAGATATTACACGAGTTAGCGGAATAAGAGGGACTCTTCCTTTACAAGAACAACTTCTTTTAGATGTCCTCAAAACAAGGGTGGAGATACCGAGCCTTGATATGGGAAGTAGAATGATTCAGGAAAGACTTTCTGGGAAAAAGGTGCTCATTGTACTTGATGATGTGCCTGAATTTTGTAAACTTTTAGACCTACTGAAATGTCGTAATTGGTTTAGTGGAGGAACTGTAATAATCGTGACAGCAGAAGATTTAGAGCTACTGGAAAAACATCGAGTTGATTATGTTTTTCGGATGAAGCCAATGAATGACAATGAGTCCCTTGAGCTTCTTAGTTGGCACGCACTTAGAGAAGCAAAACCAAAACAAAAAGAACACGATTACCTTGCAAGAAGAATAGCTATTTATTGTCTACGACTACCTCTAATCCTTGAAGTCATTGGAAGTAATTTATTTGAAAGAACGAAAGAAGAATGGTATGGGGTATTACGTGATTTAGAAAAAATTGGCTCACCCTCTGTTGAAAATAAATTGAACATATGCTTCAAAGGTTTACAGAATCAAATGGTAAAAGATTTATTCCTTTATGTATCTCGTTTCTTTGTTGGCAAGGGCAGAAACTATGCTACGAAGATCCTAAATGGTTGTCAAATAGACGTTGATATTGGAATAAGAGTTCTCTTGGAGCGTAACCTCTTAAAAGTCACGAAGAACAACAAATTTGGAATGCATCCTTTGCTACAAGAAATGGGATTAACAATTATTCGAGAAATTTCAGAAAAGGATCCTTCGAAGAACAGGCCATGGTTGTTTGATAAGGATACAAAATATGGGACAAAAGCCACGCAATTGTTGCTTCAGAAACTGGATCAAGTCGAAATGTCGTTAAATCCAGAGTACCTGTTACAGAAACTGAGATGGATCAGTCCGTATGGGTTTTATTCAGAATACCTTGATAACAAATTTTGTGCAGATGATGCAATAGCATTTGATCAGTTCGCACCCCAGGTTTTGAGGTCGCTAAAAGTCCTTAACCTCAGTCACTCCAACTATCTAACAACAACCCCTGACTTTACCAGACTACCATGTCTTGAACAGCTTATTCTGAAATGTTGTCGAAGATTACGCAAAGTACACCAATCTATTGGATGTCTCTGCAATCTTTTACTGCTAGATTTGAAGGACTGTACAAGTCTAAGCAATCTCCCGAAAGAGATATATAAGTTGAAATCTTTAAGAACACTGAATCTTTCTGGTTGTTCGAAGATTGACCTAATGGATAAAGATATAGCACAGTTGGAATCCCTGACAATTCTAATCGCTGAAAATACAACTGTCAAACATGTTCCTTTTTCAGTTATAAGCTCAAAAAGCATTGGATATATATGCCTACGTCGATTTGAGGGATTGTCTCATAATCTTTTTCCTTCTATCATTCGCTCTTGGATGTCACAAAATATGAATCTCATATCTTACATGCATTTGTTTTGCATGGATAAGGAGGATAATAGTTGGGATGATATTGTGCCATCAGTTAGTAGTAGCCTTAGAAATCTTCGAAGTGTTTTGGTACAATGTAACACCGAGTTTCAACTATCTAAACAAGTAAAAAGTATTCTGGTTGAATATTTTGCAAATACTACAGAATCAGGAATTTCAAAGCATCGCGTAAGGTCTTCTTTGATTGGTGTTGGAAGATGCAATGAATTCTTCAACAGTGTCAGCTATAGCATATCTGAGGTACTGAGAAGCAGTGAGTGGTGTGAAGTTTCTCTCCCAACTGTCAATGATCCTTGTTGTTTGGCCCATATGGGTGAGGGACACTCTGTTTCTTTCATTATGCCTCAAGATCGTGACATGAAGGGAATGGCTTTGTGTGTTGTTTATTTATCAACTCCTGAAGTCATTGAACCTGAATTTACTACTATCTTAATTGTTAATCACACAAAGTGTACATTCCATATACACAACCTTGACACAATAATTTGCTTTAATGATGAGGATTGGAATGGTATAAGGTCAAATTTAGGATGTGGAGACAGGGTGGAGATGTTTGTGAGTTTTGGTAATGGATTGGTGGTCAAGAAGACTGCGGTGTATCTGATATGTGGTGAATCAAAGAACATGGAAAAAGCGTCTGAGCCAAAGAAACATTCTCTCACCAGATTCATAAAGAAAGTTGTAATGTGA 2937 0.382 MASSIPSMEFTALSSSLPRNYDVLINFTGEDIHRKFVSHLDSALSAVGFTTFLHHQNAVKPMHIQEPIVNLCRVAIVVFTKTYSESAWCLHQLQQIVKWHETCCQHVLPVYYEIAPSDVRLQQGDFGKAFKATAHQTFSEQELEHGMSRWSHALTKVANCFGWDESNYRSDAEVVNKIVKSLLNLSVFSATKFPVGLQSRVENVIRTIKSKSTKVCIIGICGKGGSGKTTLAKAIYNQIQITFRDKSFIEDITRVSGIRGTLPLQEQLLLDVLKTRVEIPSLDMGSRMIQERLSGKKVLIVLDDVPEFCKLLDLLKCRNWFSGGTVIIVTAEDLELLEKHRVDYVFRMKPMNDNESLELLSWHALREAKPKQKEHDYLARRIAIYCLRLPLILEVIGSNLFERTKEEWYGVLRDLEKIGSPSVENKLNICFKGLQNQMVKDLFLYVSRFFVGKGRNYATKILNGCQIDVDIGIRVLLERNLLKVTKNNKFGMHPLLQEMGLTIIREISEKDPSKNRPWLFDKDTKYGTKATQLLLQKLDQVEMSLNPEYLLQKLRWISPYGFYSEYLDNKFCADDAIAFDQFAPQVLRSLKVLNLSHSNYLTTTPDFTRLPCLEQLILKCCRRLRKVHQSIGCLCNLLLLDLKDCTSLSNLPKEIYKLKSLRTLNLSGCSKIDLMDKDIAQLESLTILIAENTTVKHVPFSVISSKSIGYICLRRFEGLSHNLFPSIIRSWMSQNMNLISYMHLFCMDKEDNSWDDIVPSVSSSLRNLRSVLVQCNTEFQLSKQVKSILVEYFANTTESGISKHRVRSSLIGVGRCNEFFNSVSYSISEVLRSSEWCEVSLPTVNDPCCLAHMGEGHSVSFIMPQDRDMKGMALCVVYLSTPEVIEPEFTTILIVNHTKCTFHIHNLDTIICFNDEDWNGIRSNLGCGDRVEMFVSFGNGLVVKKTAVYLICGESKNMEKASEPKKHSLTRFIKKVVM 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00612 978 Gene3D Ribonuclease Inhibitor 551 808 IPR032675 -
Viun10g00612 978 SMART till_3 20 160 IPR000157 GO:0007165
Viun10g00612 978 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Viun10g00612 978 Pfam NB-ARC domain 199 420 IPR002182 GO:0043531
Viun10g00612 978 Gene3D - 18 180 IPR035897 -
Viun10g00612 978 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 696 IPR044974 GO:0006952
Viun10g00612 978 SMART AAA_5 214 352 IPR003593 GO:0016887
Viun10g00612 978 PRINTS Disease resistance protein signature 217 232 - -
Viun10g00612 978 PRINTS Disease resistance protein signature 386 400 - -
Viun10g00612 978 PRINTS Disease resistance protein signature 656 672 - -
Viun10g00612 978 PRINTS Disease resistance protein signature 292 306 - -
Viun10g00612 978 Gene3D - 351 435 IPR042197 -
Viun10g00612 978 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 163 IPR035897 -
Viun10g00612 978 SUPERFAMILY L domain-like 587 776 - -
Viun10g00612 978 Gene3D - 181 344 IPR027417 -
Viun10g00612 978 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 445 IPR027417 -
Viun10g00612 978 ProSiteProfiles Leucine-rich repeat profile. 589 611 IPR001611 GO:0005515
Viun10g00612 978 Pfam TIR domain 20 187 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00612 Viun-Chr10 5752797 5756762 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00612 10 702 WRKY Transcription Factor Family AT4G12020 23.947 1.13e-45 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00612 - - vun:114166214 1928.29