Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00610 ATGGAAAGATATAAAATTTTGAGAGAGCTCGGGGATGGTTCTTGCGGTCATGTATATAAAGCCCGTGATATGCGAACATACGAGATTGTTGCTGTCAAAAAGTTGAAAAGAAAGTTTTGTTTCTGGGAAGAATACACAAATTTAAGAGAAGTTAAGGCCCTCCGTAAAATGAATCACCCAAATATCATAAAGTTGAAAGAGGTTGTTAGAGAAAATAATGAACTATTTTTCATTTTTGAATACATGGATTGTAATCTTTATCAATTAATAAAGGAGAGAGAAAAACCCTTTTCAGAAGAAGAGATACGGTGCTTTGTGAGGCAAATGCTGGAAGGACTTAGTCATATGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTGAGAATTTGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACGGTGGTATCGAGCTCCAGAAGTTTTGTTGCGAGCCCCTTCTTATACTCCTGCTGTCGACATGTGGGCAGTTGGTGCTATATTAGCTGAGCTTTTTACTTTGACCCCTTTATTTCCTGGTGAAAGTGAAATAGATCAATTGTACAAAATATATGGCATTCTTGGGATGCCTGATTCCTCTGCTTTCACCATCGGGGCAAACAACTCTCAATTATTGGATTTGGTTTCTCATGAAATTGTTCCACCTGTGAAACTTTCTAACATCATTCCAAATGCTAGTTCGGAAGCTATAGACTTGATGACACAACTGCTACATTGGGACCCATCAAGAAGGCCAGATGCAGATCAGTCATTACAACATCCATTTTTCCATGTGAATGCATGGGTTCCTTGTCCACTCAGTGATCCACTCGAGCTGAAGCTGAGTAGCAAGAGGGCAAAGCCAAATCTCGAGCTGAAACTGCAGGATTTTGGCCCTGATCCCGATGATTGTTTTCTTGGCTTGACTTTAGCTGTAAAGCCCAGTGTTTCAAACATAGATGTGGTCCAAAATGTATCGCACGGTGTAAGAGAGAACATGCTATTTTGCTCAGATTTTAATGATCATTCAGACCAGTCAGTATTCTGGACCTTATTATCTCCTGATCGAAATGGTGTTGCTAACTCCGCAGAGACTTCACTGTCACTGTCATTCAGTTCAGTGCAACAACATCCGCCGATTGGAGTTCCACAGTCTACGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACTACACCATTTTTGGCACTGTCTTCTCCCTTCCAGCGCGGCCACTGCCTTTGA 1311 0.4073 MERYKILRELGDGSCGHVYKARDMRTYEIVAVKKLKRKFCFWEEYTNLREVKALRKMNHPNIIKLKEVVRENNELFFIFEYMDCNLYQLIKEREKPFSEEEIRCFVRQMLEGLSHMHKKGFFHRDLKPENLLVTNDVLKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLLRAPSYTPAVDMWAVGAILAELFTLTPLFPGESEIDQLYKIYGILGMPDSSAFTIGANNSQLLDLVSHEIVPPVKLSNIIPNASSEAIDLMTQLLHWDPSRRPDADQSLQHPFFHVNAWVPCPLSDPLELKLSSKRAKPNLELKLQDFGPDPDDCFLGLTLAVKPSVSNIDVVQNVSHGVRENMLFCSDFNDHSDQSVFWTLLSPDRNGVANSAETSLSLSFSSVQQHPPIGVPQSTGFSFQPLQPNILTTPFLALSSPFQRGHCL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00610 436 Pfam Protein kinase domain 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00610 436 FunFam Probable serine/threonine-protein kinase DDB_G0268078 83 291 - -
Viun10g00610 436 SUPERFAMILY Protein kinase-like (PK-like) 1 285 IPR011009 -
Viun10g00610 436 CDD STKc_MAK_like 4 284 - -
Viun10g00610 436 SMART serkin_6 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00610 436 FunFam Serine/threonine-protein kinase MHK 1 83 - -
Viun10g00610 436 Gene3D Transferase(Phosphotransferase) domain 1 83 289 - -
Viun10g00610 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Viun10g00610 436 ProSiteProfiles Protein kinase domain profile. 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00610 436 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Viun10g00610 436 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00610 Viun-Chr10 5732963 5740594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00610 7 284 MAP Kinase Gene Family AT4G01370 40.000 2.45e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Viun10g00610 Pkinase 6.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00610 K08829 K08830 gmx:100792842 831.632