Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00604 ATGGAACCTAACGGGATTGGCGAACTCAAGGTACCGTTGTTGCAGGCTCCGGAGGCTGCCGCCGCCGCCGCCGTAAAGACAGTCACGTTTCAACTGAGCGACATCAAATGTGCTTCGTGCGTAAATTCCGTTGAGGCCGTTGTCGGGGGCCTTAACGGCGTGAAAAGCGTCGCCGTTTCGCCGCTTGATGGCCGCGCTGCCATCAAGTTTGACCCCAAGTTGGTTACTGTGAAACAAATAAAAGAAGGCATAGAGGAGAGTGGGTTTGGAGTTGATGAGCTTCATGAACAGGACATTGCAATGTGCCGGGTACGGATTAAAGGAATGGCATGCACAAGCTGCTCTGAGTCTGTTGAGAATGCCCTTCAAATGGTTGAAGGGGTGAAAAAAGCAATAGTTGGTCTTGCTTTGGAGGAGGCAAAAGTGCACTTTGATCCTAATCTCACCGATGTTGACAAGATAATTGAGTCCATAGAGGATGCAGGTTTTGGAGCTGATCTTATTAGCTCTGGGAATGATGCAAACAAAGTGTTTCTGAAGCTGGAAGGTGTTGATTCCGCAGAAGATGTAAATGCAGTAATGTCTTCTCTTGAGTTAGCTGGGGGGGTGAACCATGTCGAGATGGATTTATCAGAACATAAAGTTACAGTTAGCTATGATCCAGATGTTACAGGTCCAAGGTTTCTTATTCACTGTGTTCAGGAAGCTAGCTGTGGCCCCAAGAAGTATCAAGCAACCTTATACTCTCCTTCGACTCAAAGAGGAAGGGATAAAGTGAACGAAATCCGTATGTATAGGGACCAATTTTTGTTCAGCTGCTTATTTTCTGTTCCCGTGTTTGTATTTGCCATGGTGCTTCCCATGCTTCCTCCTTATGGCAACTGGTTAAACTACAGGATCCACAACATGCTTACTCTTGGCCTGTTCTTAAGATGGATTCTTTGCACGCCTGTCCAGTTCATAATTGGAAAAAGGTTCTATGTTGGATCATATCACGCACTGAAGCGAAAATCTGCTAACATGGATGTGCTTGTTGCACTTGGCACAAATGCTGCTTATTTTTACTCTCTATATATCTTAATAAAAGCACTGACTTCGGATACATTTGAAGGACAAGATTTCTTTGAGACAAGTTCTATGTTGATATCCTTTATTCTACTAGGGAAGTATTTGGAAATTGTGGCTAAAGGGAAAACATCTGATGCTTTAGGAAAACTGACTCAACTTGTTCCTGATAAAGCTTATTTAGTAGCAATTGATACTGATGGAAATATAACCACGGAGACAGAAATTGACACTCAACTTATACAAAAAAATGACATAATTAAGATTATTCCTGGGGCCAAAATTCCTGTTGATGGAATTGTTATAAAAGGGCAAAGCTACGCAAATGAAAGTATGATCACTGGGGAGGCAAGACCTGTTGATAAGAGCCCAGGAGACAAGGTCATCAGTGGAACCATCAATGAAAATGGATGCTTGCTGGTTAAGGCCACACATGTTGGATCAGACACTGCACTTTCTCAAATAGTTCAACTCGTTGAAGCTGCTCAACTTGCCAAAGCACCAGTTCAAAAACTTGCTGACCATATTTCACGGGTTTTTGTTCCAATAGTGGTTGTTGCGGCACTAATAACTTGGCTTGGATGGTTCATTCCTGGGCAAGCTGGTATTTTTCCTAAACATTGGATACCAACTTCAATGGATGCATTTGAGCTTGCTTTGCAGTTTGCTATTTCTGTGTTGGTTGTTGCTTGCCCATGTGCCCTGGGACTTGCAACACCAACAGCAGTCATGGTTGCTTCAGGCATGGGTGCTTCTCAAGGTGTCCTCATAAAGGGTGGAAATGCACTGGAAAAGGCACACAAGGTAACAGTTGTTGTGTTTGATAAGACTGGTACTCTAACAGTTGGGAAGCCAGAGGTAGTTAGTGCAGTTCTGTTTTCTGAATTTTCTATGGAGGATTTATGTGACATGACAATTGCTGTGGAGGCAAGCAGTGAGCACCCAATAGCAAAAGCTGTTGTGGTACATGCGAAGAGACTGCGCAAGAAGTTTGATTCCTCCACAGAGGAAGTCCTGGATGTGGATGATTTTGAGGTACACATGGGAGCTGGTGTAAGTGGAAAAGTTGGTGATAGAACGGTTGTAGTTGGAAACAAGAGACTCATGCATGCTTGTAATATTCCAGTAGGTTCTCAGGTTGAGAAGTACATCTCGGAAAATGAAAATTTGGCTAGAACTTGCATTTTAGTTTCAATTGATGGAAAGATTGCTGGTGCATTCTGTGTAACTGATCCTGTAAAGCCAGAAGCTAGACGTGTTGTATCTTTTCTCCACTCAATGGGCATCTCAAGCATCATAGTAACTGGTGATAACCGTGCTACCGCAACTGCTATTGCAAATGAAGTAGGTATTGATGAGGTTTTTGCTGAGACAGATCCTGTTGGCAAAGCTAACAAGGTGAAAGACTTGCAGATGAAAGGAATGACTGTGGCAATGGTGGGTGATGGAATAAATGACTCACCAGCCCTGGTTGCTGCTGATGTTGGGATGGCAATTGGTGCTGGAACTGACATAGCCATAGAAGCAGCTGATATAGTTCTGGTGAAAAGCAGTCTGGAAGATGTGATCACAGCCATAGATTTATCCAGAAAGACCATGTCACGCATCCGACTGAACTACATCTGGGCTCTTGGTTACAACATTCTGGGCATGCCAATTGCTGCTGGAGTCTTGTACCCTTTTGCAGGAATCAGATTGCCCCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCTTCTCTTAGTGTGGTTTCGTCCTCTCTTCTGCTGCAGTTCTATAGAAAACCTCTGCATATAGAATCCTCTTGA 2871 0.4385 MEPNGIGELKVPLLQAPEAAAAAAVKTVTFQLSDIKCASCVNSVEAVVGGLNGVKSVAVSPLDGRAAIKFDPKLVTVKQIKEGIEESGFGVDELHEQDIAMCRVRIKGMACTSCSESVENALQMVEGVKKAIVGLALEEAKVHFDPNLTDVDKIIESIEDAGFGADLISSGNDANKVFLKLEGVDSAEDVNAVMSSLELAGGVNHVEMDLSEHKVTVSYDPDVTGPRFLIHCVQEASCGPKKYQATLYSPSTQRGRDKVNEIRMYRDQFLFSCLFSVPVFVFAMVLPMLPPYGNWLNYRIHNMLTLGLFLRWILCTPVQFIIGKRFYVGSYHALKRKSANMDVLVALGTNAAYFYSLYILIKALTSDTFEGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVAIDTDGNITTETEIDTQLIQKNDIIKIIPGAKIPVDGIVIKGQSYANESMITGEARPVDKSPGDKVISGTINENGCLLVKATHVGSDTALSQIVQLVEAAQLAKAPVQKLADHISRVFVPIVVVAALITWLGWFIPGQAGIFPKHWIPTSMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGNALEKAHKVTVVVFDKTGTLTVGKPEVVSAVLFSEFSMEDLCDMTIAVEASSEHPIAKAVVVHAKRLRKKFDSSTEEVLDVDDFEVHMGAGVSGKVGDRTVVVGNKRLMHACNIPVGSQVEKYISENENLARTCILVSIDGKIAGAFCVTDPVKPEARRVVSFLHSMGISSIIVTGDNRATATAIANEVGIDEVFAETDPVGKANKVKDLQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFAGIRLPPWLAGACMAASSLSVVSSSLLLQFYRKPLHIESS 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00604 956 CDD P-type_ATPase_Cu-like 269 931 - -
Viun10g00604 956 Gene3D - 19 97 - -
Viun10g00604 956 SUPERFAMILY Calcium ATPase, transduction domain A 428 514 IPR008250 -
Viun10g00604 956 Gene3D - 173 249 - -
Viun10g00604 956 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 20 951 - -
Viun10g00604 956 SUPERFAMILY HAD-like 626 941 IPR036412 -
Viun10g00604 956 ProSitePatterns E1-E2 ATPases phosphorylation site. 630 636 IPR018303 -
Viun10g00604 956 Pfam haloacid dehalogenase-like hydrolase 625 849 - -
Viun10g00604 956 FunFam Copper-transporting ATPase 1, putative 396 518 - -
Viun10g00604 956 NCBIfam copper ion binding protein 28 91 IPR006122 GO:0005507
Viun10g00604 956 NCBIfam copper ion binding protein 104 164 IPR006122 GO:0005507
Viun10g00604 956 ProSiteProfiles Heavy-metal-associated domain profile. 26 92 IPR006121 GO:0046872
Viun10g00604 956 FunFam Copper-transporting ATPase HMA5 99 170 - -
Viun10g00604 956 SFLD Haloacid Dehalogenase 610 887 - -
Viun10g00604 956 SUPERFAMILY HMA, heavy metal-associated domain 171 240 IPR036163 GO:0046872
Viun10g00604 956 Pfam E1-E2 ATPase 421 606 - -
Viun10g00604 956 CDD HMA 104 165 IPR006121 GO:0046872
Viun10g00604 956 ProSitePatterns Heavy-metal-associated domain. 106 135 IPR017969 GO:0046872
Viun10g00604 956 PRINTS Copper-transporting ATPase 1 signature 53 76 - -
Viun10g00604 956 PRINTS Copper-transporting ATPase 1 signature 27 52 - -
Viun10g00604 956 PRINTS Copper-transporting ATPase 1 signature 124 145 - -
Viun10g00604 956 Pfam Heavy-metal-associated domain 29 89 IPR006121 GO:0046872
Viun10g00604 956 Pfam Heavy-metal-associated domain 103 163 IPR006121 GO:0046872
Viun10g00604 956 NCBIfam heavy metal translocating P-type ATPase 341 944 IPR027256 GO:0006812|GO:0016020|GO:0019829
Viun10g00604 956 Gene3D - 101 171 - -
Viun10g00604 956 SUPERFAMILY HMA, heavy metal-associated domain 24 94 IPR036163 GO:0046872
Viun10g00604 956 ProSitePatterns Heavy-metal-associated domain. 32 60 IPR017969 GO:0046872
Viun10g00604 956 CDD HMA 29 91 IPR006121 GO:0046872
Viun10g00604 956 CDD HMA 179 224 IPR006121 GO:0046872
Viun10g00604 956 FunFam ATPase copper transporting beta 23 96 - -
Viun10g00604 956 Gene3D - 396 518 - -
Viun10g00604 956 Gene3D - 619 885 IPR023214 -
Viun10g00604 956 ProSiteProfiles Heavy-metal-associated domain profile. 100 166 IPR006121 GO:0046872
Viun10g00604 956 Gene3D - 639 768 IPR023299 GO:0000166
Viun10g00604 956 NCBIfam HAD-IC family P-type ATPase 381 912 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun10g00604 956 SFLD p-type atpase 610 887 IPR044492 -
Viun10g00604 956 SUPERFAMILY HMA, heavy metal-associated domain 97 171 IPR036163 GO:0046872
Viun10g00604 956 SUPERFAMILY Calcium ATPase, transmembrane domain M 373 621 IPR023298 -
Viun10g00604 956 FunFam Probable copper-transporting ATPase HMA5 748 892 - -
Viun10g00604 956 PRINTS P-type cation-transporting ATPase superfamily signature 835 854 - -
Viun10g00604 956 PRINTS P-type cation-transporting ATPase superfamily signature 464 478 - -
Viun10g00604 956 PRINTS P-type cation-transporting ATPase superfamily signature 760 771 - -
Viun10g00604 956 PRINTS P-type cation-transporting ATPase superfamily signature 628 642 - -
Viun10g00604 956 PRINTS P-type cation-transporting ATPase superfamily signature 858 870 - -
Viun10g00604 956 PRINTS P-type cation-transporting ATPase superfamily signature 782 792 - -
Viun10g00604 956 ProSiteProfiles Heavy-metal-associated domain profile. 175 241 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00604 Viun-Chr10 5649405 5655522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00604 25 954 Primary Pumps ATPases AT1G63440 56.090 0.0 1048
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00604 K17686 - gmx:100793894 1689.47