Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00601 ATGGACGACGACTTCGACATGCCGCCGCCGGATTCCATGAACGACGACTTCGACTTCGCCGGCGCTGACGGCGGTGACATCGACCCCCCTGTCCTCAAGGTCGGCGAGGAGAAGGAAATTGGAAAACAGGGCTTGAAGAAGAAACTCCTCAAGGAGGGCGAAGGATGGAACACTCCTGAGGTTGGTGACGAGGTTCAAGTTCACTACACTGGGACATTGCTTGATGGCACTAAGTTTGATTCCAGCAGAGACAGGGGAACTCCTTTCAGTTTCACGCTTGGACAAGGGCAAGTTATTAAAGGATGGGATCAAGGTATTGCAACGATGAAGAAAGGTGAAAATGCCCTTTTTACCATCCCAGCCGAGCTAGCGTATGGTGAATCTGGTTCTCCTCCAACTATTCCCCCCAATGCAACTCTTCAGTTTGATGTGGAGCTGTTGTCTTGGACTAGTGTTAAGGACATATGTAAGGATGGAGGTTTATTTAAGAAGATAGTTACTGAGGGTGAAAAATGGGAGAACCCCAAGGATCTTGATGAAGTTTTAGTGAATTACGAAGCACGTCTTGAAGATGGGACTCTAGTAGCAAAATCCGATGGAGTGGAGTTCACAGTCAAAGATGGTTATTTTTGTCCTGCTTTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTGACTGTGAAGCCACAATATGGATTTGGTGAGAAGGGTAAGCCAGCACATGGTGATGAAGGTGCAGTTCCACCAAATGCATCATTGGAGATTTCTCTTGAGTTAGTTTCTTGGAAGACTGTGTCAGAGGTAACTGATGACAAGAAGGTCATTAAGAAGATCATCAAAGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCAGTTGTAAAATTGAAAGTAATTGGTAAGCTGCAAGATGGTACGGTGTTTTTGAAGAAGGGTCATGATAACGAAGGGGAGCTGGTTGAATTCAAAACTGATGAGGAACAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTGAGGTGGCATTGTTAACTATTGCGCCTGAGTATGGTTTTGGCTCAACAGAGTCTAAACAGGAACTTGCTTTGGTTCCTGCTAACTCTACTTTGTATTATGAGGTTGAGCTAGTATCGTTTGAGAAGGATAAGGAATCATGGGACATGAACACTCCAGAGAAGATCGAAGCTGCTGGCAAGAAGAAAGAAGAAGGGAATGCATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATATGAAAAGGCTGTAAAGTTCATAGAGTACGATACCTCCTTCAGTGAAGAGGAGAAGAAGAGCTCCAAGACCTTGAAGGTTGCCTGTAATCTAAACAATGCAGCGTGCAAGTTGAAGCTAAAAGATTATAAACAAGCAGAGAAATTGTGCACTAAGGTACTGGAACTTGAGAGCACCAACGTGAAGGCTCTCTATAGAAGGGCCCAGGCATACATCCACTTGGCTGATTTGGATTTGGCTGAATTTGATATTAAGAAAGCTCTTGAGCTTGACCCTGACAACAGGGAAGTCAAGCTTGAGTACAGGACCTTGAAGGAAAAGATGAAGGAATTCAACAAAAAGGAGGCAAAATTTTATGGAAATATTTTCAATAAACTGCATAAGCTGGATTCTTTGGACAATAACAAAGCAGAGTCGAAGGATGCCCAACCCATGAATGTCGACAGCAAGGCATAA 1737 0.4381 MDDDFDMPPPDSMNDDFDFAGADGGDIDPPVLKVGEEKEIGKQGLKKKLLKEGEGWNTPEVGDEVQVHYTGTLLDGTKFDSSRDRGTPFSFTLGQGQVIKGWDQGIATMKKGENALFTIPAELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGLFKKIVTEGEKWENPKDLDEVLVNYEARLEDGTLVAKSDGVEFTVKDGYFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGAVPPNASLEISLELVSWKTVSEVTDDKKVIKKIIKEGEGYERPNEGAVVKLKVIGKLQDGTVFLKKGHDNEGELVEFKTDEEQVIDGLDRAVLTMKKGEVALLTIAPEYGFGSTESKQELALVPANSTLYYEVELVSFEKDKESWDMNTPEKIEAAGKKKEEGNALFKAGKYARASKRYEKAVKFIEYDTSFSEEEKKSSKTLKVACNLNNAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYIHLADLDLAEFDIKKALELDPDNREVKLEYRTLKEKMKEFNKKEAKFYGNIFNKLHKLDSLDNNKAESKDAQPMNVDSKA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00601 578 Gene3D - 268 390 IPR046357 GO:0003755
Viun10g00601 578 Pfam Tetratricopeptide repeat 488 521 IPR001440 GO:0005515
Viun10g00601 578 SUPERFAMILY FKBP-like 272 405 - -
Viun10g00601 578 Gene3D - 154 267 IPR046357 GO:0003755
Viun10g00601 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 295 388 IPR001179 GO:0003755
Viun10g00601 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 178 267 IPR001179 GO:0003755
Viun10g00601 578 FunFam Peptidylprolyl isomerase 35 153 - -
Viun10g00601 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 173 263 IPR001179 GO:0003755
Viun10g00601 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 289 385 IPR001179 GO:0003755
Viun10g00601 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 57 147 IPR001179 GO:0003755
Viun10g00601 578 Gene3D Tetratricopeptide repeat domain 391 548 IPR011990 GO:0005515
Viun10g00601 578 SUPERFAMILY FKBP-like 22 155 - -
Viun10g00601 578 SMART tpr_5 405 438 IPR019734 GO:0005515
Viun10g00601 578 SMART tpr_5 454 487 IPR019734 GO:0005515
Viun10g00601 578 SMART tpr_5 488 521 IPR019734 GO:0005515
Viun10g00601 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 62 150 IPR001179 GO:0003755
Viun10g00601 578 Coils Coil 521 541 - -
Viun10g00601 578 SUPERFAMILY TPR-like 394 552 IPR011990 GO:0005515
Viun10g00601 578 FunFam Peptidylprolyl isomerase 154 267 - -
Viun10g00601 578 FunFam Peptidylprolyl isomerase 268 390 - -
Viun10g00601 578 ProSiteProfiles TPR repeat profile. 488 521 IPR019734 GO:0005515
Viun10g00601 578 FunFam Peptidylprolyl isomerase 393 548 - -
Viun10g00601 578 Gene3D - 35 153 IPR046357 GO:0003755
Viun10g00601 578 MobiDBLite consensus disorder prediction 1 28 - -
Viun10g00601 578 SUPERFAMILY FKBP-like 154 270 - -
Viun10g00601 578 PANTHER PEPTIDYLPROLYL ISOMERASE 37 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00601 Viun-Chr10 5593522 5598764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00601 1 562 Calmodulin-binding Proteins AT3G25230 80.427 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00601 K09571 - gmx:100794411 979.548