Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00598 ATGGAAAATCAGTTCTTTATGAATTCTGGGGTTCACTTTGAACCTGCACCACCACCACCACTACCACCTTCCTCTTCTTCGGTGCCCTCTTGGCAATCACTCTCACCCGCCATGGGAATTCAACCAACACTTCTGAATTGTGCCTCTGACCAGACCCAGGATTGCTTTTACAACCCCAATTGGGAAAAGTCAACAACAGATCATGCACTTCACTTTGATTCCTCAGCACTGAGTTCAATGGTCTCATCTCCTGCAGCATCGTCCTACCCCACCAGCAGCAGCAACATGTCCAATGACAATTTCATCATCAGGGAATTGGTGGGGAGATTGGGAGCTATTGGGAGTTCTGATGAGATCCCACACCCTTTGGTTGTGGCTTCTACTTACATCAATAATGGCAGTAACAGCCCTAATGCTTCTTGCGACACCACCCCTTTGAGTTCCCCTCCCAAGGTGAAGACTGTGCAGAGCTTGGTGAATGAGAGGTTGGCGAATTTGGGAGGAAAGTCGGTGGCTTTGAATTCCAGTGTGGCTGAATTCTCCGCTGACCCTGGCTTCGCTGAGCGGGCTGCAAAGTTTTCTTGCTTTGGCAGCAGGAGTTTCAATGGTAGGAATGTCCAATTGGGGGTGAACAATGGTGAATTGGCTCAAAGATCTGCGTCAGTGGTGGAAAATGGTGGAAAGTTATCTAGAATCTCTAGCAGTCCTTTGCTCAAGACACTTGGATCTCAAATGGGTACCGCAGAGAACAAGAATTCAGCAATTCAGGACCAGGAGAAAGTGGAGGTTGCCAATTCTCAAGAGGAATCTACCATATCTGAGCAAACACCAAATGGAGAAATTGGGATGAAAAATTGCCAAGATATGACGAATTCCAGGAAAAGAAAAGCATCTTCCAAAGGAAAAACCAGAGAAACAATCAAGGGTATGGAAGTCAGTGAGGATTCAAACTCAAAGCGAAACAAGCCAAACGAGGGTGAGGGAAACGAAAATGGACCAGTGAAGGTTGAGGAAGAGTCCAAAGCAGTGGAAGAGAAACAGAACAAAAGCAACACAAAACCTCCTGAGCCACCAAAAGATTACATTCATGTGAGAGCAAGAAGAGGCCAAGCCACTGACAGCCATAGTCTAGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAACAAGGTCACTGGAAAAGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACAAGGATGGATCTTAGTATTGACAGCCTTGTTTCAAAAGATGTATTTCAATCTAATAATTCTTTGGCAACGCACCCAAATCCAACATTCCCTCTAGATTCCTCAACACAAGCCTTTTATGGGCACCAGCATCAGCAAAACCCAGTTATCCATAATAACATACCGAACAGAACGGTGACCCACTGCTCAGTGGACCCATTAGACACATCTTTGTGCCAAAATCTTGCAATGCAATTACCCTCCCTAAATGGGTTTAATGAAGTTGCCTCTCAGTTTCCATTGACATTCTGTGAGGAGGATCTGCACACCATTGTGCAGATGGGGTTTGGCCAAACTGCAAACTGGAAAACACCAATTCAATCACCAAGTTTCAACGGTTCAAATAATGTAACCCAGATGAAAGTTGAGCTCTGA 1719 0.4503 MENQFFMNSGVHFEPAPPPPLPPSSSSVPSWQSLSPAMGIQPTLLNCASDQTQDCFYNPNWEKSTTDHALHFDSSALSSMVSSPAASSYPTSSSNMSNDNFIIRELVGRLGAIGSSDEIPHPLVVASTYINNGSNSPNASCDTTPLSSPPKVKTVQSLVNERLANLGGKSVALNSSVAEFSADPGFAERAAKFSCFGSRSFNGRNVQLGVNNGELAQRSASVVENGGKLSRISSSPLLKTLGSQMGTAENKNSAIQDQEKVEVANSQEESTISEQTPNGEIGMKNCQDMTNSRKRKASSKGKTRETIKGMEVSEDSNSKRNKPNEGEGNENGPVKVEEESKAVEEKQNKSNTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIDSLVSKDVFQSNNSLATHPNPTFPLDSSTQAFYGHQHQQNPVIHNNIPNRTVTHCSVDPLDTSLCQNLAMQLPSLNGFNEVASQFPLTFCEEDLHTIVQMGFGQTANWKTPIQSPSFNGSNNVTQMKVEL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00598 572 SMART finulus 376 426 IPR011598 GO:0046983
Viun10g00598 572 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 368 439 IPR036638 GO:0046983
Viun10g00598 572 MobiDBLite consensus disorder prediction 243 361 - -
Viun10g00598 572 MobiDBLite consensus disorder prediction 1 32 - -
Viun10g00598 572 Gene3D - 367 442 IPR036638 GO:0046983
Viun10g00598 572 Pfam Helix-loop-helix DNA-binding domain 374 421 IPR011598 GO:0046983
Viun10g00598 572 FunFam Basic helix-loop-helix transcription factor 367 439 - -
Viun10g00598 572 CDD bHLH_AtBPE_like 360 445 - -
Viun10g00598 572 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 370 420 IPR011598 GO:0046983
Viun10g00598 572 MobiDBLite consensus disorder prediction 302 361 - -
Viun10g00598 572 MobiDBLite consensus disorder prediction 243 288 - -
Viun10g00598 572 Coils Coil 417 437 - -
Viun10g00598 572 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 256 481 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00598 Viun-Chr10 5527831 5531260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00598 1 531 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.929 2.80e-105 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g00598 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00598 - - gmx:100801233 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01814 5 16589516 16592506 Viun10g00598 10 5527831 5531260 PCT