LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g00595	ATGTCTTCTTCTTCTTCTTCATCATCGAAACCCCAATGGATCTACGACGTCTTCATCAACTTCAGGGGAGGAGACACTCGCAGGGACTTCGTCTCGCATCTCTACTGCGCCCTCTCCAACGCCGGCGTCAACACTTTCTTCGACGACGAGAATCTGCTCAAGGGAACGCCGCTGGAGGAGTTAACGCGAGCGATCGAAGCCTCTCAGATTGCGATCGTCGTTTTCTCCGAAACCTACACCGAATCTACTTGGTGCCTCACCGAGCTTGAGAAAATCATCGATTGCCACGAATCCTACGGCCAAATCGTTGTGCCCATATTCCACGGCATCGAGCCGTCCATTCTACGCAATCCCAAGGGTCGTTTTCGTGATGCTTTGGAAGCTGCTGCGCAGAAGAAGTATTCCGCAGAGCATAGCGAGTACGGGTTGTCGAGATGGAAAAACGTGCTCAACAAAGCTGCAAATTTCTCTGGTTGGGATGTCAAAAATCACAGGAATACAGCTAAACTAGTGAAGGAAATTGTCGAGGACATACTGACAAAACTAGACTACGCACTCTTGTCTATAACTGAATTTCCTGTTGGATTGGAATCCCGTGTGCAAGAAGTGGTTGGAATTGTAGAAAATCAATCCGCCAAGGTTTGTATCATTGGAATATGGGGAATGGGAGGGTCGGGCAAAACTACGATGGCCAAAGCCATCTACAATCAAATCCATCGTAGGTTCAATGATAAGAGTTTCATTGAAAATATTAGGGAGGTTCGTGAAATAGATGGAAGAGGGAATGTTCACTTACAAGAACAACTTCTTTCAGATGTCCTAAAAACAAAGGTCAAGATACATAGTGTTGGGATGGGAACAACTATGATCGAAAATAGACTTTCTAGAAAGAAGGTGTTCATTGTACTTGATGATGTGAATGACTTTGGCCAATTAAAAGACCTATGTGGAAATCAGAAATGGTTTGGTAAGGAAAGTGTAATAATCATTACAACTAGAGATCTACACCTACTTGACCTACTTAAAGTTGATTATGTTTATAAAATGGAGGAAATGGACAAAAATGAGTCCCTTGAGCTTTTTAGTTGGCATGCTTTCAGAGAAGCAAAACCAAGAGAAGATTTTGACGAGCTCGCAAGAAATGTAGTTGCTTATTGTGGAGGTCTACCACTAGCTCTTGAAGTCCTTGGTTCTTATTTAATAGAAAGGACAAAGAAAGATTGGGAAAGTGTATTGTTAAAACTAGAAAGAATTCCCAATGATAAAGTTCAAGAGAAATTAAGAATAAGCTTTGATGGTTTATGCGATGAAATGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGATAGAGCCTATGTTACAGAGATACTAAATGGTTGTGGGCTACATGCTGACATTGGAATAACAGTCCTCATTGAGCGTAGTCTCTTAAAAGTTGAAAAGAACAACAAACTTGGAATGCATCAATTGCTGCGGGACATGGGGAGAGAGATAATTTGTGAGAGTTCAAGGAAGGATCCTGGGAAGCGGAGTCGATTGTGGTTTCATGAGGATGTACTTGACGTATTGACAAAGAATACTGGAACTGAAACTATTGAGGGATTGGCTCTGAAATTGCATTTCATCGGCAAAGATTGCTTCAAAGCTTATGCTTTTGAGGAAATGAAGAGATTGAGACTGTTGCAACTTGATCATGTACAGCTTACTGGAAATTATGGTTATCTTTCTAAGCAACTGAGGTGGATCTGTTGGCAAGGATTTCCTTCAAAATACATACCTAAAAGTTTTTATCTGGACGGTGCAGTTGTGATTGATTTAAAACACAGTAATCTGCAACTTTTCTGGAAAGAACCTCAGGTTTTAGGGTGGCTAAAAATCCTCAATCTTAGTCACTCCAAGTACTTGACTGTAACCCCTGACTTTTCAAAACTACCGAAACTTGAAAAGCTTATTCTCAAAGATTGCCCACGTTTGTGCAAGGTTGTTCGAAGATTGACAAATTAG	2019	0.4091	MSSSSSSSSKPQWIYDVFINFRGGDTRRDFVSHLYCALSNAGVNTFFDDENLLKGTPLEELTRAIEASQIAIVVFSETYTESTWCLTELEKIIDCHESYGQIVVPIFHGIEPSILRNPKGRFRDALEAAAQKKYSAEHSEYGLSRWKNVLNKAANFSGWDVKNHRNTAKLVKEIVEDILTKLDYALLSITEFPVGLESRVQEVVGIVENQSAKVCIIGIWGMGGSGKTTMAKAIYNQIHRRFNDKSFIENIREVREIDGRGNVHLQEQLLSDVLKTKVKIHSVGMGTTMIENRLSRKKVFIVLDDVNDFGQLKDLCGNQKWFGKESVIIITTRDLHLLDLLKVDYVYKMEEMDKNESLELFSWHAFREAKPREDFDELARNVVAYCGGLPLALEVLGSYLIERTKKDWESVLLKLERIPNDKVQEKLRISFDGLCDEMEKDIFLDVCCFFIGKDRAYVTEILNGCGLHADIGITVLIERSLLKVEKNNKLGMHQLLRDMGREIICESSRKDPGKRSRLWFHEDVLDVLTKNTGTETIEGLALKLHFIGKDCFKAYAFEEMKRLRLLQLDHVQLTGNYGYLSKQLRWICWQGFPSKYIPKSFYLDGAVVIDLKHSNLQLFWKEPQVLGWLKILNLSHSKYLTVTPDFSKLPKLEKLILKDCPRLCKVVRRLTN	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g00595	672	Gene3D	Ribonuclease Inhibitor	480	672	IPR032675	-
	Viun10g00595	672	SMART	till_3	14	156	IPR000157	GO:0007165
	Viun10g00595	672	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	186	445	IPR027417	-
	Viun10g00595	672	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	664	IPR044974	GO:0006952
	Viun10g00595	672	Gene3D	-	351	435	IPR042197	-
	Viun10g00595	672	FunFam	Disease resistance protein (TIR-NBS-LRR class)	353	435	-	-
	Viun10g00595	672	Gene3D	-	8	187	IPR035897	-
	Viun10g00595	672	FunFam	Disease resistance protein (TIR-NBS-LRR class)	11	184	-	-
	Viun10g00595	672	PRINTS	Disease resistance protein signature	216	231	-	-
	Viun10g00595	672	PRINTS	Disease resistance protein signature	293	307	-	-
	Viun10g00595	672	PRINTS	Disease resistance protein signature	647	663	-	-
	Viun10g00595	672	PRINTS	Disease resistance protein signature	386	400	-	-
	Viun10g00595	672	ProSiteProfiles	TIR domain profile.	13	182	IPR000157	GO:0007165
	Viun10g00595	672	Pfam	NB-ARC domain	200	420	IPR002182	GO:0043531
	Viun10g00595	672	SUPERFAMILY	"Winged helix" DNA-binding domain	421	528	IPR036390	-
	Viun10g00595	672	SUPERFAMILY	L domain-like	509	663	-	-
	Viun10g00595	672	Pfam	TIR domain	15	185	IPR000157	GO:0007165
	Viun10g00595	672	Gene3D	-	188	346	IPR027417	-
	Viun10g00595	672	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	159	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g00595	Viun-Chr10	5416160	5420039	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun10g00595	15	660	WRKY Transcription Factor Family	AT4G12020	28.593	1.23e-71	251

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g00595	-		-	gmx:100815297	1155.97