Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00594 ATGTCTTCTTCTTCTTCTTCATCATCGAAACCCCAATGGATCTACGACGTCTTCATCAACTTCAGGGGAGGAGACACTCGCAGGGACTTCGTCTCGCATCTCTACTGCGCCCTCTCCAACGCCGGCGTCAACACTTTCTTCGACGACGAGAATCTGCTCAAGGGAACGCCGCTGGAGGAGTTAACGCGAGCGATCGAAGCCTCTCAGATTGCGATCGTCGTTTTCTCCGAAACCTACACCGAATCTACTTGGTGCCTCACCGAGCTTGAGAAAATCATCGATTGCCACGAATCCTACGGCCAAATCGTTGTGCCCATATTCCACGGCATCGAGCCGTCCATTCTACGCAATCCCAAGGGTCGTTTTCGTGATGCTTTGGAAGCTGCTGCGCAGAAGAAGTATTCCGCAGAGCATAGCGAGTACGGGTTGTCGAGATGGAAAAACGTGCTCAACAAAGCTGCAAATTTCTCTGGTTGGGATGTCAAAAATCACAGGAATACAGCTAAACTAGTGAAGGAAATTGTCGAGGACATACTGACAAAACTAGACTACGCACTCTTGTCTATAACTGAATTTCCTGTTGGATTGGAATCCCGTGTGCAAGAAGTGGTTGGAATTGTAGAAAATCAATCCGCCAAGGTTTGTATCATTGGAATATGGGGAATGGGAGGGTCGGGCAAAACTACGATGGCCAAAGCCATCTACAATCAAATCCATCGTAGGTTCAATGATAAGAGTTTCATTGAAAATATTAGGGAGGTTCGTGAAATAGATGGAAGAGGGAATGTTCACTTACAAGAACAACTTCTTTCAGATGTCCTAAAAACAAAGGTCAAGATACATAGTGTTGGGATGGGAACAACTATGATCGAAAATAGACTTTCTAGAAAGAAGGTGTTCATTGTACTTGATGATGTGAATGACTTTGGCCAATTAAAAGACCTATGTGGAAATCAGAAATGGTTTGGTAAGGAAAGTGTAATAATCATTACAACTAGAGATCTACACCTACTTGACCTACTTAAAGTTGATTATGTTTATAAAATGGAGGAAATGGACAAAAATGAGTCCCTTGAGCTTTTTAGTTGGCATGCTTTCAGAGAAGCAAAACCAAGAGAAGATTTTGACGAGCTCGCAAGAAATGTAGTTGCTTATTGTGGAGGTCTACCACTAGCTCTTGAAGTCCTTGGTTCTTATTTAATAGAAAGGACAAAGAAAGATTGGGAAAGTGTATTGTTAAAACTAGAAAGAATTCCCAATGATAAAGTTCAAGAGAAATTAAGAATAAGCTTTGATGGTTTATGCGATGAAATGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGATAGAGCCTATGTTACAGAGATACTAAATGGTTGTGGGCTACATGCTGACATTGGAATAACAGTCCTCATTGAGCGTAGTCTCTTAAAAGTTGAAAAGAACAACAAACTTGGAATGCATCAATTGCTGCGGGACATGGGGAGAGAGATAATTTGTGAGAGTTCAAGGAAGGATCCTGGGAAGCGGAGTCGATTGTGGTTTCATGAGGATGTACTTGACGTATTGACAAAGAATACTGGAACTGAAACTATTGAGGGATTGGCTCTGAAATTGCATTTCATCGGCAAAGATTGCTTCAAAGCTTATGCTTTTGAGGAAATGAAGAGATTGAGACTGTTGCAACTTGATCATGTACAGCTTACTGGAAATTATGGTTATCTTTCTAAGCAACTGAGGTGGATCTGTTGGCAAGGATTTCCTTCAAAATACATACCTAAAAGTTTTTATCTGGACGGTGCAGTTGTGATTGATTTAAAACACAGTAATCTGCAACTTTTCTGGAAAGAACCTCAGGTTTTAGGGTGGCTAAAAATCCTCAATCTTAGTCACTCCAAGTACTTGACTGTAACCCCTGACTTTTCAAAACTACCGAAACTTGAAAAGCTTATTCTCAAAGATTGCCCACGTTTGTGCAAGGTACACAAGTCCATTGGAGGTCTCCGCAATCTTCTACTGATAAATTTAAAGGACTGTAAAAGTCTTGAAAATCTGCCAAAGGGAGTTTATAAGTTGAAATCGGTAAAAACTCTCATCCTTTCAGGTTGTTCGAAGATTGACAAATTAGAAGAAGATATAGTGCAGATGGAATCCTTGATAACACTAATTGCTGAAAATACTGCTATGAAACAAGTGCCCTTTTCAATAGTAAAGTCAAAAAGCATTGGTTATATATCCCTATGTGGATTTGAAGGATTTTCTCGTAATGTTTTCCCTTCTATCATTCGTTCTTGGATGTCACCAACAATGAATCCCCTATCTTATGTTCGTCCATTTTGTAGCACATCGTCATATCTAGTTTCCATGGATATGCGAAGTTATAATTTGGGTGATCTTGAACCAATGCTTAGCGGCCTTTCAAATCTACGAAGTGTTTTGGTTCAATGTGACAGAGAGTCTCAAGTTTCTATGCAAGTAAGAACAATTTTGGACGACAGTGTAAATTTTACACAATTTGAAATAACATCACAAATATCAAATCATTACCTTAGGTCTTATTTGATTGGAATCGGAAGTTATCAAGAAGTCTTCAATATTCTAAGCGCTAGCATATCTGAGGGATTGGCAACCAGTGATTCTTGTGATGCTTTTCTCCCTGGTGACAATGATCCTTTTTGGTTGGCCCATATGGGTGAGGGAAATTCAGTGTATTTCACGGTGCCTGAGGATTGTCGCATGAAAGGAATGACTTTGTGTGTAGTTTATTTATCAGCCCCTGAAATCACAGCAACTGAATATCTTATTAGTGTTTTGATGGTTAATTACACAAGGTACACTATCCAGGTATTCAAGCGAGAGACGGTATTTTCCTTTAATGATGTAGATTGGCAGGGCATAATATCACATTGGAGCCCTGGAGACAAGGTGGAGATTTTTGTGAATTTTGGCAATGGATTGGAGGTCAAGAAGACAGCTATCTATCTGATGTGTGATGAATCAATTGACAAGGAACACAACCCTTCTCCTGAGCCAAAGAAGGAACCAAAGAAAAACGTCTTTGAAAGATTTATAAAGAAAATTTTAATATAA 3105 0.3958 MSSSSSSSSKPQWIYDVFINFRGGDTRRDFVSHLYCALSNAGVNTFFDDENLLKGTPLEELTRAIEASQIAIVVFSETYTESTWCLTELEKIIDCHESYGQIVVPIFHGIEPSILRNPKGRFRDALEAAAQKKYSAEHSEYGLSRWKNVLNKAANFSGWDVKNHRNTAKLVKEIVEDILTKLDYALLSITEFPVGLESRVQEVVGIVENQSAKVCIIGIWGMGGSGKTTMAKAIYNQIHRRFNDKSFIENIREVREIDGRGNVHLQEQLLSDVLKTKVKIHSVGMGTTMIENRLSRKKVFIVLDDVNDFGQLKDLCGNQKWFGKESVIIITTRDLHLLDLLKVDYVYKMEEMDKNESLELFSWHAFREAKPREDFDELARNVVAYCGGLPLALEVLGSYLIERTKKDWESVLLKLERIPNDKVQEKLRISFDGLCDEMEKDIFLDVCCFFIGKDRAYVTEILNGCGLHADIGITVLIERSLLKVEKNNKLGMHQLLRDMGREIICESSRKDPGKRSRLWFHEDVLDVLTKNTGTETIEGLALKLHFIGKDCFKAYAFEEMKRLRLLQLDHVQLTGNYGYLSKQLRWICWQGFPSKYIPKSFYLDGAVVIDLKHSNLQLFWKEPQVLGWLKILNLSHSKYLTVTPDFSKLPKLEKLILKDCPRLCKVHKSIGGLRNLLLINLKDCKSLENLPKGVYKLKSVKTLILSGCSKIDKLEEDIVQMESLITLIAENTAMKQVPFSIVKSKSIGYISLCGFEGFSRNVFPSIIRSWMSPTMNPLSYVRPFCSTSSYLVSMDMRSYNLGDLEPMLSGLSNLRSVLVQCDRESQVSMQVRTILDDSVNFTQFEITSQISNHYLRSYLIGIGSYQEVFNILSASISEGLATSDSCDAFLPGDNDPFWLAHMGEGNSVYFTVPEDCRMKGMTLCVVYLSAPEITATEYLISVLMVNYTRYTIQVFKRETVFSFNDVDWQGIISHWSPGDKVEIFVNFGNGLEVKKTAIYLMCDESIDKEHNPSPEPKKEPKKNVFERFIKKILI 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00594 1034 SMART till_3 14 156 IPR000157 GO:0007165
Viun10g00594 1034 Gene3D Ribonuclease Inhibitor 550 857 IPR032675 -
Viun10g00594 1034 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 159 IPR035897 -
Viun10g00594 1034 PRINTS Disease resistance protein signature 293 307 - -
Viun10g00594 1034 PRINTS Disease resistance protein signature 695 711 - -
Viun10g00594 1034 PRINTS Disease resistance protein signature 386 400 - -
Viun10g00594 1034 PRINTS Disease resistance protein signature 216 231 - -
Viun10g00594 1034 Pfam TIR domain 15 185 IPR000157 GO:0007165
Viun10g00594 1034 Gene3D - 351 435 IPR042197 -
Viun10g00594 1034 Gene3D - 188 345 IPR027417 -
Viun10g00594 1034 SUPERFAMILY L domain-like 492 817 - -
Viun10g00594 1034 Pfam NB-ARC domain 200 420 IPR002182 GO:0043531
Viun10g00594 1034 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 184 - -
Viun10g00594 1034 ProSiteProfiles TIR domain profile. 13 182 IPR000157 GO:0007165
Viun10g00594 1034 Coils Coil 711 731 - -
Viun10g00594 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 445 IPR027417 -
Viun10g00594 1034 Gene3D - 8 187 IPR035897 -
Viun10g00594 1034 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 733 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00594 Viun-Chr10 5412752 5420034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00594 15 795 WRKY Transcription Factor Family AT4G12020 28.814 1.97e-79 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00594 - - gmx:100815297 1733.38