Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00593 ATGTCTTCTTCTTCTTCTTCATCATCGAAACCCCAATGGATCTACGACGTCTTCATCAACTTCAGGGGAGGAGACACTCGCAGGGACTTCGTCTCGCATCTCTACTGCGCCCTCTCCAACGCCGGCGTCAACACTTTCTTCGACGACGAGAATCTGCTCAAGGGAACGCCGCTGGAGGAGTTAACGCGAGCGATCGAAGCCTCTCAGATTGCGATCGTCGTTTTCTCCGAAACCTACACCGAATCTACTTGGTGCCTCACCGAGCTTGAGAAAATCATCGATTGCCACGAATCCTACGGCCAAATCGTTGTGCCCATATTCCACGGCATCGAGCCGTCCATTCTACGCAATCCCAAGGGTCGTTTTCGTGATGCTTTGGAAGCTGCTGCGCAGAAGAAGTATTCCGCAGAGCATAGCGAGTACGGGTTGTCGAGATGGAAAAACGTGCTCAACAAAGCTGCAAATTTCTCTGGTTGGGATGTCAAAAATCACAGGAATACAGCTAAACTAGTGAAGGAAATTGTCGAGGACATACTGACAAAACTAGACTACGCACTCTTGTCTATAACTGAATTTCCTGTTGGATTGGAATCCCGTGTGCAAGAAGTGGTTGGAATTGTAGAAAATCAATCCGCCAAGGTTTGTATCATTGGAATATGGGGAATGGGAGGGTCGGGCAAAACTACGATGGCCAAAGCCATCTACAATCAAATCCATCGTAGGTTCAATGATAAGAGTTTCATTGAAAATATTAGGGAGGTTCGTGAAATAGATGGAAGAGGGAATGTTCACTTACAAGAACAACTTCTTTCAGATGTCCTAAAAACAAAGGTCAAGATACATAGTGTTGGGATGGGAACAACTATGATCGAAAATAGACTTTCTAGAAAGAAGGTGTTCATTGTACTTGATGATGTGAATGACTTTGGCCAATTAAAAGACCTATGTGGAAATCAGAAATGGTTTGGTAAGGAAAGTGTAATAATCATTACAACTAGAGATCTACACCTACTTGACCTACTTAAAGTTGATTATGTTTATAAAATGGAGGAAATGGACAAAAATGAGTCCCTTGAGCTTTTTAGTTGGCATGCTTTCAGAGAAGCAAAACCAAGAGAAGATTTTGACGAGCTCGCAAGAAATGTAGTTGCTTATTGTGGAGGTCTACCACTAGCTCTTGAAGTCCTTGGTTCTTATTTAATAGAAAGGACAAAGAAAGATTGGGAAAGTGTATTGTTAAAACTAGAAAGAATTCCCAATGATAAAGTTCAAGAGAAATTAAGAATAAGCTTTGATGGTTTATGCGATGAAATGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGATAGAGCCTATGTTACAGAGATACTAAATGGTTGTGGGCTACATGCTGACATTGGAATAACAGTCCTCATTGAGCGTAGTCTCTTAAAAGTTGAAAAGAACAACAAACTTGGAATGCATCAATTGCTGCGGGACATGGGGAGAGAGATAATTTGTGAGAGTTCAAGGAAGGATCCTGGGAAGCGGAGTCGATTGTGGTTTCATGAGGATGTACTTGACGTATTGACAAAGAATACTGGAACTGAAACTATTGAGGGATTGGCTCTGAAATTGCATTTCATCGGCAAAGATTGCTTCAAAGCTTATGCTTTTGAGGAAATGAAGAGATTGAGACTGTTGCAACTTGATCATGTACAGCTTACTGGAAATTATGGTTATCTTTCTAAGCAACTGAGGTGGATCTGTTGGCAAGGATTTCCTTCAAAATACATACCTAAAAGTTTTTATCTGGACGGTGCAGTTGTGATTGATTTAAAACACAGTAATCTGCAACTTTTCTGGAAAGAACCTCAGGTTTTAGGGTGGCTAAAAATCCTCAATCTTAGTCACTCCAAGTACTTGACTGTAACCCCTGACTTTTCAAAACTACCGAAACTTGAAAAGCTTATTCTCAAAGATTGCCCACGTTTGTGCAAGGTACACAAGTCCATTGGAGGTCTCCGCAATCTTCTACTGATAAATTTAAAGGACTGTAAAAGTCTTGAAAATCTGCCAAAGGGAGTTTATAAGTTGAAATCGGGATTGGCAACCAGTGATTCTTGTGATGCTTTTCTCCCTGGTGACAATGATCCTTTTTGGTTGGCCCATATGGGTGAGGGAAATTCAGTGTATTTCACGGTGCCTGAGGATTGTCGCATGAAAGGAATGACTTTGTGTGTAGTTTATTTATCAGCCCCTGAAATCACAGCAACTGAATATCTTATTAGTGTTTTGATGGTTAATTACACAAGGTACACTATCCAGGTATTCAAGCGAGAGACGGTATTTTCCTTTAATGATGTAGATTGGCAGGGCATAATATCACATTGGAGCCCTGGAGACAAGGTGGAGATTTTTGTGAATTTTGGCAATGGATTGGAGGTCAAGAAGACAGCTATCTATCTGATGTGTGATGAATCAATTGACAAGGAACACAACCCTTCTCCTGAGCCAAAGAAGGAACCAAAGAAAAACGTCTTTGAAAGATTTATAAAGAAAATTTTAATATAA 2568 0.4054 MSSSSSSSSKPQWIYDVFINFRGGDTRRDFVSHLYCALSNAGVNTFFDDENLLKGTPLEELTRAIEASQIAIVVFSETYTESTWCLTELEKIIDCHESYGQIVVPIFHGIEPSILRNPKGRFRDALEAAAQKKYSAEHSEYGLSRWKNVLNKAANFSGWDVKNHRNTAKLVKEIVEDILTKLDYALLSITEFPVGLESRVQEVVGIVENQSAKVCIIGIWGMGGSGKTTMAKAIYNQIHRRFNDKSFIENIREVREIDGRGNVHLQEQLLSDVLKTKVKIHSVGMGTTMIENRLSRKKVFIVLDDVNDFGQLKDLCGNQKWFGKESVIIITTRDLHLLDLLKVDYVYKMEEMDKNESLELFSWHAFREAKPREDFDELARNVVAYCGGLPLALEVLGSYLIERTKKDWESVLLKLERIPNDKVQEKLRISFDGLCDEMEKDIFLDVCCFFIGKDRAYVTEILNGCGLHADIGITVLIERSLLKVEKNNKLGMHQLLRDMGREIICESSRKDPGKRSRLWFHEDVLDVLTKNTGTETIEGLALKLHFIGKDCFKAYAFEEMKRLRLLQLDHVQLTGNYGYLSKQLRWICWQGFPSKYIPKSFYLDGAVVIDLKHSNLQLFWKEPQVLGWLKILNLSHSKYLTVTPDFSKLPKLEKLILKDCPRLCKVHKSIGGLRNLLLINLKDCKSLENLPKGVYKLKSGLATSDSCDAFLPGDNDPFWLAHMGEGNSVYFTVPEDCRMKGMTLCVVYLSAPEITATEYLISVLMVNYTRYTIQVFKRETVFSFNDVDWQGIISHWSPGDKVEIFVNFGNGLEVKKTAIYLMCDESIDKEHNPSPEPKKEPKKNVFERFIKKILI 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00593 855 SMART till_3 14 156 IPR000157 GO:0007165
Viun10g00593 855 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 697 IPR044974 GO:0006952
Viun10g00593 855 PRINTS Disease resistance protein signature 293 307 - -
Viun10g00593 855 PRINTS Disease resistance protein signature 216 231 - -
Viun10g00593 855 PRINTS Disease resistance protein signature 671 687 - -
Viun10g00593 855 PRINTS Disease resistance protein signature 386 400 - -
Viun10g00593 855 Pfam NB-ARC domain 200 420 IPR002182 GO:0043531
Viun10g00593 855 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 159 IPR035897 -
Viun10g00593 855 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 184 - -
Viun10g00593 855 Gene3D - 7 181 IPR035897 -
Viun10g00593 855 ProSiteProfiles TIR domain profile. 13 182 IPR000157 GO:0007165
Viun10g00593 855 Gene3D - 182 346 IPR027417 -
Viun10g00593 855 SUPERFAMILY L domain-like 509 698 - -
Viun10g00593 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 445 IPR027417 -
Viun10g00593 855 Pfam TIR domain 15 185 IPR000157 GO:0007165
Viun10g00593 855 Gene3D - 351 435 IPR042197 -
Viun10g00593 855 Gene3D Ribonuclease Inhibitor 549 703 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00593 Viun-Chr10 5412752 5420036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00593 15 694 WRKY Transcription Factor Family AT4G12020 29.202 3.19e-75 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00593 - - gmx:100815297 1204.89