Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00588 ATGACGTCACCAATTCCTTCCATTGAAGTCGCCTCTTCAACCACCAAACTCCCACGAAAGTACGATGTGCTCATCAACTTCAACGGAGAAGACATCCGCAGGAAATTTGTTTCTCATCTCGATTCTGTCCTCTCTGCTGTTGGACTCACCACTTTCCTTCACCACGACAATGGAGTGAAACCAATGCACGAACCTATTCTCAATCTGTGTCGGGTAGCAATAGTTGTTTTCACCCAAACATATTCCCAATCTGCTTGGTGTCTTCATCAACTTCAACAAATTATTCAATGGCACCAAACTTATTGCAAACATGTTCTGCCCGTATATTACGAAATTCAGCCATCTGATATACGTCTTCAGAAGGGTGACTTTGGAAAAGCCTTCGAAACAACTGCACACCAAACATTTTCAGCACAAGAACTTGAACATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGTAATCACAGGAGTGATGCTGAACTAGTGGACAAAATCGTTAAGAGCGTTCTTAATTTACCAGTCATGTCTGCTACTAAATTTCCAGTTGGATTACAATCCAACGTGGAAGATCTGATTCGAACTATAAAAGATAAATCCAGCGAAGTTTGTATAGTAGGGATAACTGGAGCGGGAGGATCTGGTAAAACCACCCTTGCCAAAGCCATCTACAATCAAATTCATGATACATTCAGGGAGAAAAGTTTCATCGAGGATATTGGACAAGTTAGTCGACCGAGAGGGCATCGTGGTTTACAAGAACAATTTCTTTTCGATGTACTAAAAACAAAGGTGGAGATAACTAGCGTTGATATGGGTAGAAGAATGATTCGGGAAAGACTTACTGGGAGAAGGGTGTTCCTTGTACTTGACGATTTGACTGAGAATTTTACATTGTTTGACCTATGGGAATGCCGTGAATGGTTCAGTGGAGGAACTGTAATAATCATTACAACAAGAGATGTAGACCTACCCAGGATTCTTAAAGTTGATTCTGTTTTTGGGATAAAGCTAATGAGCGCAAAGGAATCCCTTGAGCTTCTTAGTTGGCATGCATTTAGAGAACCAAAACCAAAGGAAGAATACAATGACCTGGCTGAAAGTGTAGTTACTCATTGTGGAGGACTACCTCTAGCACTTGAAGTCGTTGGAAATTGTTTATTTGAAAGGACAAAAAAAGAATGGAAAAGTGTATTGTTAAAATTAGAGAAAATTCCCCTGCACAATGTTCAACAGAAATTGAAAATAAGCTTTGACGGATTACGCAATGAAATTGAAAAAGATTTATTCATTGATATATGTTGTTCCTTTGTTGGTGAGGGCAGAGCCTATGTTACGAAGATCCTAAATGACTGTGGAGTAGACGCTGATAGTGGAATAAGAGTTCTAATAGAATGTAGTCTTATAACAGTTAAAAAGAACAACAAACTTGGAATGCATCCTTTGCTACAAGAAATGGGAAGAGAAATTATACGTGAAATTGATGAAGAGGAATTTTGGAGGGAGTGGCCACCGGGGTTTGATGATGCAGAATATGTGTTGACTGATAATACAGGGAGAAGAGCCATTGAGCGATTGCCTGTGAAATTACGTTCAGTGAGAAGAGAACCATCAAGACTGCTGAAACACACTGAAAATTCTGATTCCCTTTCTAAGAAACTGAGGTGGATCAGTTTGGATTGGTTTTCTTCAGAATACCTACCTGACGAATTTTATCTGCATGAAGCAATAGCGATTGATTTAAAACACAGTGATCTTCGATTCGTCTTGAAAGAACCCCAGGTATTGGCAAATAGTGAGTCTTGTGATGTCTCTCTTCCAAGTGATAATCTTCCTTATTGGTTGGCCTATATGGGTGAGGGAAATTCTGTTTCTTTCACTGTGCCTTGGGATCGTGACATGAAGGGAATGGCTTTGAGTGTTGTTTATTTATCAACCCCTGAAATTGTGGCAACTGAATGTCTTACAGGTGTCTTAATTGTTAATTACACAAAGTGCACATTGCAAATACACAACTATGACACAATAACTTCCTTTAATGATATAGACTGGCAGTGTATAATGTCAAATTTGGGACCTAAAGACAAGGTGGAGATTTTTGTTACTTTTGGTGATGAATTGGTGGTAAAGAACACAATACTCTATCTTATATGTGGTGAATCAAATTACTTGAAAAAAGAGATAGAGTCAAAGAAAAATTGTCTCCTTAGATTCATAACGAAAATTGTAATGTGCGACTTCTGGTAA 2277 0.3913 MTSPIPSIEVASSTTKLPRKYDVLINFNGEDIRRKFVSHLDSVLSAVGLTTFLHHDNGVKPMHEPILNLCRVAIVVFTQTYSQSAWCLHQLQQIIQWHQTYCKHVLPVYYEIQPSDIRLQKGDFGKAFETTAHQTFSAQELEHGMSRWSHALTKAANFFGWDESNHRSDAELVDKIVKSVLNLPVMSATKFPVGLQSNVEDLIRTIKDKSSEVCIVGITGAGGSGKTTLAKAIYNQIHDTFREKSFIEDIGQVSRPRGHRGLQEQFLFDVLKTKVEITSVDMGRRMIRERLTGRRVFLVLDDLTENFTLFDLWECREWFSGGTVIIITTRDVDLPRILKVDSVFGIKLMSAKESLELLSWHAFREPKPKEEYNDLAESVVTHCGGLPLALEVVGNCLFERTKKEWKSVLLKLEKIPLHNVQQKLKISFDGLRNEIEKDLFIDICCSFVGEGRAYVTKILNDCGVDADSGIRVLIECSLITVKKNNKLGMHPLLQEMGREIIREIDEEEFWREWPPGFDDAEYVLTDNTGRRAIERLPVKLRSVRREPSRLLKHTENSDSLSKKLRWISLDWFSSEYLPDEFYLHEAIAIDLKHSDLRFVLKEPQVLANSESCDVSLPSDNLPYWLAYMGEGNSVSFTVPWDRDMKGMALSVVYLSTPEIVATECLTGVLIVNYTKCTLQIHNYDTITSFNDIDWQCIMSNLGPKDKVEIFVTFGDELVVKNTILYLICGESNYLKKEIESKKNCLLRFITKIVMCDFW 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00588 758 Gene3D - 349 432 IPR042197 -
Viun10g00588 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 443 IPR027417 -
Viun10g00588 758 Gene3D - 179 342 IPR027417 -
Viun10g00588 758 Gene3D - 18 178 IPR035897 -
Viun10g00588 758 ProSiteProfiles TIR domain profile. 19 184 IPR000157 GO:0007165
Viun10g00588 758 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 612 IPR044974 GO:0006952
Viun10g00588 758 Pfam TIR domain 20 186 IPR000157 GO:0007165
Viun10g00588 758 SUPERFAMILY "Winged helix" DNA-binding domain 420 505 IPR036390 -
Viun10g00588 758 SMART till_3 20 158 IPR000157 GO:0007165
Viun10g00588 758 PRINTS Disease resistance protein signature 290 304 - -
Viun10g00588 758 PRINTS Disease resistance protein signature 383 397 - -
Viun10g00588 758 PRINTS Disease resistance protein signature 215 230 - -
Viun10g00588 758 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 161 IPR035897 -
Viun10g00588 758 Pfam NB-ARC domain 197 424 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00588 Viun-Chr10 5399074 5403005 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00588 19 594 WRKY Transcription Factor Family AT4G12020 24.382 3.62e-44 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00588 - - pvu:PHAVU_010G029000g 785.408