Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00586 ATGGAACACGCCTCTTCAACTTCCAAACTGCCACAGATGTACGATGTGCTCATCGACTTCACTGGAGAAGAAATCCGCAGAAAATTTGTTTCTCATCTCGATTCTGCTTTCACTTCTGTTGGACTCACCACTTTCCTTCATCAGGAGAACGCAATGAAGGAGATGCAGATCCAAGAACATAGTCTCGATCTCTGTCGGGTAGCCATTGTTATTTTTACCAAAACCTATTCTCAATCTGCATGGTCTCTTCGTCAGCTTCAACAAATCATTAAATGGCACGAAGCGTATTACCGACATGTTTTGCCTGTATATAACGAAATTCAACCATCTGATGTACGTCTTCAGAAGTGTGATTTTGGAAAATCCTTCAAAGCAACTGCACACCAAACATTTCCAGCACAACAATTGGAGCATGGCATATCCAGGTGGAGTCACGCACTCACCAAAGCTGCAGATTTCTTTGGATGGGATGAGAGCAATTGCAGGAGCGATGCTGAACTTGTGGACAAAATCGTTAAGAGTGTTCTTAATTTACCAGTCTTGTCTGCAACTAAATTTCCAGTTGGATTACAATCCTACGTGGAAGATGTGATTCGTACTATAGAAGATAAATCTTCTCAAGTTTGTACGATAGTAATATGTGGTATGGAAGGATCTGGTAAATCCACGATTGCCAAAGCCATCTACAATCGTATTAATGGTACGTTCACGGAGAAAAGTTTCATCGAAGATGTTGCACAAATTAGTCAAACGAGAGGGTATGTTCATTTACAAGAACGACTTCTTTCAGATGTCCTGAAAACAAAGGTGAAGATACGTAGCGTTGAGATGGGAAGAAGAATGATTCGAGAAAGACTTTTTAAGAAAAGGATGCTCATTGTACTTGACGAGTACTCTCCATTCTTAGATCTAAGGAAAAGTCGTGCATGGTTTGGTAAAGGAACAGTAATAATCATTACAACAAGAAATGAAGACCTACCAGGCATACGTGAAGTTGATTCTGTTTTGCAGATAAATCTAATGAACCCAGATGAGTCCCTTGAGCTACTTAGTTGGCACGCATTTAGAGAACCGAAACCAAAAGAAGAATATTACGACCTTGCAAAAGCAGTAGCTGCTTATTGTGGAGGACTACCTCTAGTGCTTGAAGTCATTGGAAGTACTTTATTTGAAAGTACAAAAGAAGAATGGAAGAGTGTATTGTTAGAATTAGAGAAACTTCACAAGAATGATGTTCATCATAAATTGAAAATAAGCTTCGACAGTTTACGCAGTGAAAAGGAAAAGGATTTATTCCTTGATGTATGTTGTTTCCCTATTGGTTTATGTTGTTTCCCTATTGGTAAGGGCACAACCTATGTTATGAACATTCTAAATGTTTTTGGATTGGACGCTGATAGTGGAATAAGAGTTCTCATACAGCGTAACCTCATCAAAGTTAAAAACAACAACAAATTTGTAATTCATCCTTTGCTACAAAAAATGGGAAGAAAAATTTCGCAACAGGAATTTTGGAGGGAGAAGCGACTGCAGTTTGACGATGCAGAATGTTTATTCACATATAATAGAGGTACAAAATCCGCTCAGTCATTGCCAATGAAACTGCGTTCAGCCAATAGAGAACCATCAACACTACTGAAACTCGCTGGAAATTCTGAGTACCTTCCTAAGAAACTGAGATGGATCAATTTGCGTGAATTTTCTTCACCATACCTACTTAACGACTTTTATCTTGATGATGCAATAGCCATTGATTTAAAACACAGTCTTCTTCGAGTGGTCTGGAAAAAAACTCAGGTTTCTATTACTTGCCATTTTCTATTAAAACACAAAGTTTAA 1839 0.3839 MEHASSTSKLPQMYDVLIDFTGEEIRRKFVSHLDSAFTSVGLTTFLHQENAMKEMQIQEHSLDLCRVAIVIFTKTYSQSAWSLRQLQQIIKWHEAYYRHVLPVYNEIQPSDVRLQKCDFGKSFKATAHQTFPAQQLEHGISRWSHALTKAADFFGWDESNCRSDAELVDKIVKSVLNLPVLSATKFPVGLQSYVEDVIRTIEDKSSQVCTIVICGMEGSGKSTIAKAIYNRINGTFTEKSFIEDVAQISQTRGYVHLQERLLSDVLKTKVKIRSVEMGRRMIRERLFKKRMLIVLDEYSPFLDLRKSRAWFGKGTVIIITTRNEDLPGIREVDSVLQINLMNPDESLELLSWHAFREPKPKEEYYDLAKAVAAYCGGLPLVLEVIGSTLFESTKEEWKSVLLELEKLHKNDVHHKLKISFDSLRSEKEKDLFLDVCCFPIGLCCFPIGKGTTYVMNILNVFGLDADSGIRVLIQRNLIKVKNNNKFVIHPLLQKMGRKISQQEFWREKRLQFDDAECLFTYNRGTKSAQSLPMKLRSANREPSTLLKLAGNSEYLPKKLRWINLREFSSPYLLNDFYLDDAIAIDLKHSLLRVVWKKTQVSITCHFLLKHKV 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00586 612 SMART AAA_5 207 342 IPR003593 GO:0016887
Viun10g00586 612 Pfam NB-ARC domain 193 418 IPR002182 GO:0043531
Viun10g00586 612 SMART till_3 13 153 IPR000157 GO:0007165
Viun10g00586 612 Gene3D - 7 174 IPR035897 -
Viun10g00586 612 SUPERFAMILY "Winged helix" DNA-binding domain 412 503 IPR036390 -
Viun10g00586 612 Pfam TIR domain 14 176 IPR000157 GO:0007165
Viun10g00586 612 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Viun10g00586 612 Gene3D - 175 330 IPR027417 -
Viun10g00586 612 Gene3D - 341 424 IPR042197 -
Viun10g00586 612 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 594 IPR044974 GO:0006952
Viun10g00586 612 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Viun10g00586 612 PRINTS Disease resistance protein signature 285 299 - -
Viun10g00586 612 PRINTS Disease resistance protein signature 375 389 - -
Viun10g00586 612 PRINTS Disease resistance protein signature 210 225 - -
Viun10g00586 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 434 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00586 Viun-Chr10 5381217 5383405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00586 14 596 WRKY Transcription Factor Family AT4G12020 23.994 2.92e-36 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00586 - - vun:114165880 738.799