Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00584 ATGACGTCACCAATTCCTTCCACGGAAGTTGCCTCTTCAACCACCAAACTTCCACGGAAGTACGATGTGCTCATCAACTTCAATGGAGAAGAAATCTGCAGGAAATTTGTTTCTCATCTCGATTCTGTGCTCTCTGATGTTGGACTCACCACTTTCCTTCACCACGACAATGGAGTGAAACCAATGCACGAACCTATTCCCAATCTGTGTCGGGTAGCAATAGTTGTTTTCACTAAAACCTATTCCCAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATTATTGAATGGCACGAAACTTATTGCAAACATGTTCTGCCCGTATATTACGAAATTCAGCCATCTGATATACGCCTTCAGAAGGGTGATTTTGGAAAAGCCTTCGAAACAACTGCACACCAAACATTTTCAGCACAACAACTGGAACATGGCATGTCAAGGTGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCTGAACTAGTGGACAAAATCGTTAAGAGCGTTCTTAATCTACCAATCTTGTCTGCTACTAAATTTCCTGTTGGATTACAATCCAACGTGGAAGATCTGATTCGAACAATAAAAGATAAATCCAGCGAAGTTTGTATAATAGGGATAACTGGAGCGGGAGGATCTGGTAAAACCACCCTTGCCAAATCCATCTACAATAAAATTCATGGGACATTCAAGAAGAAAAGTTTCATTGAGGATATTGGACAGGTTAGTCGAACGATAGGGCATCGTCGTTTAGAAGAACAATTTATTTCAGATGTCCTAAAAACAGAGGTGGAGATACCTAGCGATTATATGGAAAGTAGAACGATTCGAGAAATACTTACTGGGAAAAAGGTGCTCATTGTACTTGACGATGTGACCGAGGATTTTACATTGTTAGACCTATGGGAATGCCGTGAATGGTTAAGTGGAGGAACTGTAATAATCATTACAACAAGAGATATAGACCTACCTAGGATTCTTAAAGTTGATACTGTTTTTGGGATAAAGCTAATGAATGCAAACGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAAGAAGAATACAATGACCTTGCAAAAAGTGTAGTTACTCATTGTGGAGGATTACCTCTGGCTCTTGAAGTCATTGGAAATTGTTTATTTAAAAGAGAAAAAGAAGAATGGAATAGTGTATTGTTAAAATTAGAGCAAATTCCCCTGCACAATGTTCAACAGAAATTGAAAATAAGCTTTGACGGACTACGCAATCAAATTGAAAAATATTTATTCCTTGATATATGTTGTTTCTTTGTTGGTGAGGGCAGAGCCTGTGTTACGAAGATTCTAAATGGATGTGAAGTAGACGCTGATAGTGGAATAAGAGTTCTCATAGAATGTAGTCTCATAAAAATTAAAAAGAACAACAAACTTGGAATGCATCCATTGCTACAAGAAATGGGAAGAGAAATTATTCGTGAAATTTCAAGAAAGGAATCTTGGATGAACAACCGACTATGGTTTGATGATGCAGAATATGTGTTGACAGATAATTTAGGTAGGGAAGGGGTTTTGAAATTGCGTTCAGTCAGAAGAGAACCATCAAGACTGCTGAAACACACAGGAAATTCCGATTACCTTTCTAAGAAATTGAAGTGGATCAGTTTGGATCGGTTTTCTTCAAAATACCTATCCGGAGACTTTTATCTTCATGATGCCATAGTGATTGATTTAAAACACACTGATCTTAAACACGATGATCCTCGACTTGTCTGGAAAGAACCTCAGGCTTTGAGGTGGCTGAAGGTCCTTAATCTTAGTCACTCCATGTATTTCACAGAAACCCCTGACTTTTCTGGACTGCCAAGTCTTGAACAGCTCATTCTCAAGGACTGTACAAGATTGCGCAATGTTCACCGATCTATTAGATGTCTCTGCAATCTTACACTTCTAAATTTGAAGGATTGTACAAGTCTAAGCAATCTCCCCATAGAGATATATAAGTTGCAATCTTTAAAAACTCTCATTCTCTCTGGGTGTTCGATGATTGACCTATTGGAAAAAGATGTAGTGCAAATGGGATCCCTCATAACTCTAATTGCTGAAAATAATGCTGTGAAACATGTGCCTTTTTCGATTCTAAGCTCGAAAAGCATTGGACATATATCCCTACGTGGATTTGAGAAATTACCACTTAACCTCTTTCCTTCTATCATTCGATCTTGGATGTCGCCAATAATGAATCCTGTATCTTATATTCATTCGTTGTGCATGGATATCAACAATAACTGGGATGATATTGCGCCATTGCTTAGCAGTCTGACAAATCTTCGAAGTGTTTTGGTGCAATGTGACATCGAGTTTCAACTATCTAAGCTAGTAAAAAGTATTATGGTCGAATATTTCACAAATTTTACAGAATCAGGAATTTCAAAGCAGCAATTCAGGTCTTCTTTGATCGGTCTTGGAACATACCACGAATTCTTCAATGCTGTCAGCGATAACATCTCTGAGGTATTGGCAAATAGTGAGTCTTGTGATGTCTCTCTTCCAAGTGATAATCTTCCTTATTGGTTGGCCTATATGGGTGAGGGAAATTCTGTTTCTTTCACTGTGCCTTGGGATCGTGACATGAAGGGAATGGCTTTGAGTGTTGTTTATTTATCAACCCCTGAAATTGTGGCAACTGAATGTCTTAGAAGTGTCTTAATTGTTAATTACACAAAGTGCACATTGCAAATACACAACTATGACACAATAATTTCCTTTAATGATATAGACTGGCAGTGTATAATGTCAAATTTGGGACCTAAAGACAAGGTGGAGATTTTTGTTACTTTTGGTCATGAATTGGTGGTAAAGAACACAATACTCTATCTTATATGTGGTGAATCAAATTACTTAAAAAAAGAGATAGAGTCAAAGAAAAATTGTCTCCTTAGATTCATAACGAAAATTGTAATGTGCGACTTCTGGTAA 3006 0.3806 MTSPIPSTEVASSTTKLPRKYDVLINFNGEEICRKFVSHLDSVLSDVGLTTFLHHDNGVKPMHEPIPNLCRVAIVVFTKTYSQSAWCLHQLQQIIEWHETYCKHVLPVYYEIQPSDIRLQKGDFGKAFETTAHQTFSAQQLEHGMSRWSHALTKAANFFGWDESNHRSDAELVDKIVKSVLNLPILSATKFPVGLQSNVEDLIRTIKDKSSEVCIIGITGAGGSGKTTLAKSIYNKIHGTFKKKSFIEDIGQVSRTIGHRRLEEQFISDVLKTEVEIPSDYMESRTIREILTGKKVLIVLDDVTEDFTLLDLWECREWLSGGTVIIITTRDIDLPRILKVDTVFGIKLMNANESLELLSWHAFREPKPKEEYNDLAKSVVTHCGGLPLALEVIGNCLFKREKEEWNSVLLKLEQIPLHNVQQKLKISFDGLRNQIEKYLFLDICCFFVGEGRACVTKILNGCEVDADSGIRVLIECSLIKIKKNNKLGMHPLLQEMGREIIREISRKESWMNNRLWFDDAEYVLTDNLGREGVLKLRSVRREPSRLLKHTGNSDYLSKKLKWISLDRFSSKYLSGDFYLHDAIVIDLKHTDLKHDDPRLVWKEPQALRWLKVLNLSHSMYFTETPDFSGLPSLEQLILKDCTRLRNVHRSIRCLCNLTLLNLKDCTSLSNLPIEIYKLQSLKTLILSGCSMIDLLEKDVVQMGSLITLIAENNAVKHVPFSILSSKSIGHISLRGFEKLPLNLFPSIIRSWMSPIMNPVSYIHSLCMDINNNWDDIAPLLSSLTNLRSVLVQCDIEFQLSKLVKSIMVEYFTNFTESGISKQQFRSSLIGLGTYHEFFNAVSDNISEVLANSESCDVSLPSDNLPYWLAYMGEGNSVSFTVPWDRDMKGMALSVVYLSTPEIVATECLRSVLIVNYTKCTLQIHNYDTIISFNDIDWQCIMSNLGPKDKVEIFVTFGHELVVKNTILYLICGESNYLKKEIESKKNCLLRFITKIVMCDFW 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00584 1001 ProSiteProfiles TIR domain profile. 19 184 IPR000157 GO:0007165
Viun10g00584 1001 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 707 IPR044974 GO:0006952
Viun10g00584 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 443 IPR027417 -
Viun10g00584 1001 SUPERFAMILY "Winged helix" DNA-binding domain 420 505 IPR036390 -
Viun10g00584 1001 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 161 IPR035897 -
Viun10g00584 1001 SMART till_3 20 158 IPR000157 GO:0007165
Viun10g00584 1001 SUPERFAMILY L domain-like 546 791 - -
Viun10g00584 1001 Gene3D - 180 342 IPR027417 -
Viun10g00584 1001 Pfam TIR domain 20 185 IPR000157 GO:0007165
Viun10g00584 1001 Pfam NB-ARC domain 197 425 IPR002182 GO:0043531
Viun10g00584 1001 Gene3D - 349 432 IPR042197 -
Viun10g00584 1001 Gene3D - 14 179 IPR035897 -
Viun10g00584 1001 Gene3D Ribonuclease Inhibitor 541 858 IPR032675 -
Viun10g00584 1001 PRINTS Disease resistance protein signature 676 692 - -
Viun10g00584 1001 PRINTS Disease resistance protein signature 215 230 - -
Viun10g00584 1001 PRINTS Disease resistance protein signature 383 397 - -
Viun10g00584 1001 PRINTS Disease resistance protein signature 290 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00584 Viun-Chr10 5375589 5379483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00584 19 749 WRKY Transcription Factor Family AT4G12020 26.508 2.10e-53 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00584 - - vun:114165880 1307.35