Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00583 ATGACCTCATCAATTCCTTCCATGGAATTTGAGTCTTCATCATCTAAACTTCCATGGATGTACGATGTGCTCATCAACTTTACTGGAGACGACATTCGTAAGAAATTTGTTTCCCATCTAGATTCTGCCCTCACTAGTGTTGGATTCACCACTTTCCTTCACCATGAACCAATGCACACCCAAGAACCTATTATGAATCTGTGTCGGGTAGCAATTGTTGTTTTCACAAAAACCTATTCTCAATCTGCCTGGTGCCTTGATCAGCTTCAACAAATCATTCAATGGCACCGAACTTATTACAAACATGTTCTGCCCGTGTATTACGAAATTCAGCCATCTGATGTACGTCTTCAGAAGGGTGATTTTGGAAAAGCCTTCCGAGCAACTGTGGGTCAAAATTTTTCAAGACAAGAACAGGTGGCTTGCGTGTACAGGTGGAGCCACGCACTCACCAAAGCAACAAATTTATTTGGATGGGACGAGAGCAATTACAGGAGCGATGCTGAACTAGTAGACAAAATTGTTAAGACCGTTCTCAATTTATCAGTGTTGTCTGCTACGAAATTTCCAGTTGGATTACAACCCAACGTGGAAGATCTTGTTCGAACTATAAAAAATAAATCCGGGGAAGTTTGTATAATAGGGATATGCGGAGAGGGAGGATCCGGTAAAACCACCCTTGCCAAAGCCATCTATAATCAAATTCATGATACATTCACGGAGAAAAGTTTTATTGAAGATATCGCACAAGTTAGTCGAACAAGAAGTCATGTTAGTTTACAAGAACAACTTCTTTCAGATGTCCTAAAAGTAAAGGTGGACATACGTAGCGATGAAATGGGAACAAGTATGATTCGGAAAAGACTGTCTGGTAAAAGGGTTCTCATTGTACTTGATGATATGAATGACTACTCACCATTATTAGACCTAAGGAAAAGTCGTGCATGGTTCAGTCAAGGAACTGTAATAATCATTACAACAAGAGATGAAGACCTACTGAGGATTCATCATGTTGATTCTGTTTTTCGGCTGAAGCCAATGAGTGCAAACGAATCCCTTGAGCTTCTTAGTTGGCATGCATTCAGAGAAGCAAAACCAAAAAAAACTTACATTTACATTGCAAAAAAAGTAGTTACCTTATGTGGAGGACTACCTCTAACTCTTGAAGTCATTGGAACTTATTTATCTAAAAGGACGAAAGAAGAATGGGAAATTGTAGTGTCTAAATTACAGGAAATTCCCCAGCACGATGTTCAACAGAAATTAAAAATAAGCTTCGACGGTTTAGACAAGCAAATGGAAAAGGATTTATTCCTTCAAATATGTTGTTTCTTTGTTGGTAAAGACAGAGCTTATGTTACGAAGATCCTAAAGGATTTTGTAGTAGACGTTGATAGTGGAATAAGAGTTCTCATAGTGCGTTGCCTCATAAAACTTAAAGCAAACAACAAATTTGGAGTACATCCTTTGCTACAAGAAATGGGAAGAAAAATTATGTATTACACAAGAGAGGATGCACTGATTACATTTCCTGCGACGAGAAGATGTTGCTTCGAACTTTATCTCTCAGAGATAAGACGCAGATCAAGACAGGTTTTTTCGTGGCTAAAAGTCCATCTTAATCAATGGAAAGTTGTGAAAGAAGTGCCTTTTTCAATTGTAAGGTCAAAAAACATTGGATACATATCCCTACGTCGATTTGAACAATTGTGGCCTACTATTTTTCCTTATATCATTCGGTCACGGATGTCACCAACAATGAATCCACTAACTTATATTCATCCGCTTTGCATGGATATGGAGGATAATAGCTGGAATGATATTGCGCCATTGCTTAGCAGCCTTGCAAATCTTCGAAGTATTTTGGTGGAATGTGACACCAACTTTCAATTATATAAGCAAGTGAAAACTATTCTGGTCGAATATGGTGTAAATATTTCAGAATCAAGAATTTCAAAGCATCACTTCCGGTCTTCTTTGATCGGTGTTGGAAGATACAATACGTTCATAAATAGTGTCAGCAATACCATATCTGAGGTATTGGGAAGCAACGAGTCATGTGATGTTTATCTTCCAGGTGACAATTATCCTTATTGGTTGGCCCACATAGGTGAGGGACATTCTGTTTCTTTCACTGTGCCTCAAGATCGAGACATGAAGGGAATGGCTTTCTGTGTTGTTTATTTATCAACTCCTGGAATCGTGACGACCGAGTGTTTCACAAGTGTCTTAATTGTTAATTACACAAAGTGCACGTTACAGATGCACAACCATGGCACAATAATTTCCTTTAATGATGAAGATTGGGATAACATAATGTCAAATTTAAGATCTGGAGACAAGGTGGAGATTTTTGTGACTTTTGGCCATGAGCTGGTGATCAAGAACATAGGTGTCTATTTGATATATGGTGAATCAAATGACTTGGAAAGAGAGCCTGCGCCAATGGAAAATTCCCTGATTAGATTCATAAAGAAAATTGTAATGTGTGACTTCTGTTTATTCATGTATTTTCTTTGA 2520 0.3817 MTSSIPSMEFESSSSKLPWMYDVLINFTGDDIRKKFVSHLDSALTSVGFTTFLHHEPMHTQEPIMNLCRVAIVVFTKTYSQSAWCLDQLQQIIQWHRTYYKHVLPVYYEIQPSDVRLQKGDFGKAFRATVGQNFSRQEQVACVYRWSHALTKATNLFGWDESNYRSDAELVDKIVKTVLNLSVLSATKFPVGLQPNVEDLVRTIKNKSGEVCIIGICGEGGSGKTTLAKAIYNQIHDTFTEKSFIEDIAQVSRTRSHVSLQEQLLSDVLKVKVDIRSDEMGTSMIRKRLSGKRVLIVLDDMNDYSPLLDLRKSRAWFSQGTVIIITTRDEDLLRIHHVDSVFRLKPMSANESLELLSWHAFREAKPKKTYIYIAKKVVTLCGGLPLTLEVIGTYLSKRTKEEWEIVVSKLQEIPQHDVQQKLKISFDGLDKQMEKDLFLQICCFFVGKDRAYVTKILKDFVVDVDSGIRVLIVRCLIKLKANNKFGVHPLLQEMGRKIMYYTREDALITFPATRRCCFELYLSEIRRRSRQVFSWLKVHLNQWKVVKEVPFSIVRSKNIGYISLRRFEQLWPTIFPYIIRSRMSPTMNPLTYIHPLCMDMEDNSWNDIAPLLSSLANLRSILVECDTNFQLYKQVKTILVEYGVNISESRISKHHFRSSLIGVGRYNTFINSVSNTISEVLGSNESCDVYLPGDNYPYWLAHIGEGHSVSFTVPQDRDMKGMAFCVVYLSTPGIVTTECFTSVLIVNYTKCTLQMHNHGTIISFNDEDWDNIMSNLRSGDKVEIFVTFGHELVIKNIGVYLIYGESNDLEREPAPMENSLIRFIKKIVMCDFCLFMYFL 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00583 839 Gene3D - 177 341 IPR027417 -
Viun10g00583 839 Gene3D - 18 176 IPR035897 -
Viun10g00583 839 ProSiteProfiles TIR domain profile. 19 182 IPR000157 GO:0007165
Viun10g00583 839 SUPERFAMILY "Winged helix" DNA-binding domain 418 500 IPR036390 -
Viun10g00583 839 Gene3D - 347 430 IPR042197 -
Viun10g00583 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 439 IPR027417 -
Viun10g00583 839 PRINTS Disease resistance protein signature 213 228 - -
Viun10g00583 839 PRINTS Disease resistance protein signature 288 302 - -
Viun10g00583 839 PRINTS Disease resistance protein signature 381 395 - -
Viun10g00583 839 Pfam NB-ARC domain 199 423 IPR002182 GO:0043531
Viun10g00583 839 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 531 IPR044974 GO:0006952
Viun10g00583 839 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 159 IPR035897 -
Viun10g00583 839 SMART AAA_5 210 348 IPR003593 GO:0016887
Viun10g00583 839 SMART till_3 20 156 IPR000157 GO:0007165
Viun10g00583 839 Pfam TIR domain 21 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00583 Viun-Chr10 5359774 5364173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00583 21 505 WRKY Transcription Factor Family AT4G12020 27.049 2.62e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00583 - - vun:114166592 1680.61