Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00578 ATGTATGATGTGCTCATCAACTTCAATGGAGAGGACATCCGCAACAAATTTATTTCTCATCTCGATTCTGCCCTCTCTACTGTTGGATTCACCACTTTCCTTCATCATGAGAATGCAGTGAAGGCAATGCACATCCAACAACCTATTCTCAATCTGTGTCGGGTAGCAATTGTTGTTTTCACCAAAACCTATTCTGAATCTTGTTGGTGTCTTCATCAGCTTCAACAAATCATTGAATGGAACGAAACTTATTGCCGACATGTTCTGCCCGTATATTACGAAATTCAGCCATCTGATGTACGACTTCAAAAGGGTGAGTTTGGAAAAGCCTTCAAAGCAACTGCAGAACAAACATTTTCAGGACAACAACTGGAACATGGCATGTCCATGTGGAGCCACACACTCACCAAGGCTGCAAATTTATTTGGATGGGATGAGAGCAATTACAGGAGTGATGCCGAATTACTGGAGAAAATTGTAAAGAGTGTTTCTAATTTACCAGTCTTGTTGGCTACTAAATTTCCAGTTGGATTACACTCTCAAGTGGAAGATGTGATTCAAACTATCAAAAATAAATCTACGGAAGTTTGTACAATAGGGATATGTGGAGAGGAAGGATCTGGTAAAACCACCCTTGCCAAAGCCATCTACCATCTCGTTCATGGTACATTCATGGATAAAAGTTTCATTGAAGATATTGAACAAATTAGTGAAACAAGAGGGTATGTTCATTTACAAGAACAACTTCTTTCGGATTTGCTAAAAACAAAGGTAGAGATACTTAACGTTGAGATGGGAAGAAGTATGATTCGCGAAAGAGTTTCTGGGAAAAAGGTGCTCATTGTACTTGACGATGTTCCTAATGTTAGATAA 873 0.3906 MYDVLINFNGEDIRNKFISHLDSALSTVGFTTFLHHENAVKAMHIQQPILNLCRVAIVVFTKTYSESCWCLHQLQQIIEWNETYCRHVLPVYYEIQPSDVRLQKGEFGKAFKATAEQTFSGQQLEHGMSMWSHTLTKAANLFGWDESNYRSDAELLEKIVKSVSNLPVLLATKFPVGLHSQVEDVIQTIKNKSTEVCTIGICGEEGSGKTTLAKAIYHLVHGTFMDKSFIEDIEQISETRGYVHLQEQLLSDLLKTKVEILNVEMGRSMIRERVSGKKVLIVLDDVPNVR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00578 290 PRINTS Disease resistance protein signature 198 213 - -
Viun10g00578 290 PRINTS Disease resistance protein signature 273 287 - -
Viun10g00578 290 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 288 IPR044974 GO:0006952
Viun10g00578 290 Gene3D - 1 169 IPR035897 -
Viun10g00578 290 ProSiteProfiles TIR domain profile. 1 167 IPR000157 GO:0007165
Viun10g00578 290 Pfam NB-ARC domain 180 286 IPR002182 GO:0043531
Viun10g00578 290 Gene3D - 176 281 IPR027417 -
Viun10g00578 290 SMART till_3 1 141 IPR000157 GO:0007165
Viun10g00578 290 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 143 IPR035897 -
Viun10g00578 290 Pfam TIR domain 2 165 IPR000157 GO:0007165
Viun10g00578 290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 288 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00578 Viun-Chr10 5315626 5316601 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00578 2 290 WRKY Transcription Factor Family AT4G12020 28.328 2.53e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00578 - - vun:114165131 584.334