Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00577 ATGTTCTGCCTGTATATTACGAAACTCAGCCATCTGATGTACGTCTTCAGAAGGGTGATTTTGGAGAGGCCTTCAAAGCAACTGCACACCAAACATTCTCGGGACAAGAACTGGAGCATGGTATGTCCAGGTGGAGCTACGCACTCACCAAAGCTGCAAATTTCTTTGGATTGGATGACAGCAATTACAGTTGGATTACAGTCCCGCGTGGAAGATGTGATTCAAATCATGGAAAAGAAATCCTGGAGAGTTTTTACGATAGTGATATTTGGGAGGGGAGGATCGGGTAAAACCACCCTCGCCAAGGCCATCTACAATCAAATTCATGGTACATTCACGGAGAAAAGTTTCATTGAAGATATTGCACAAGTTCGTCGAAACAGAGCGTATGCTCATTTACAAAAACTTCTTTCAGATGTCCTGAAAACAAAGGTGGAAATGCATAGCTTTGAGATGGGAGCAAATATGATTCGGGAAAGACTTTCTGGAAAAAGGATGCTTATTGTACTTGACGATTTAAATGAGTATACTCCATTTTTAGAACTATGTGCATGTTTCGGTGGAGGAACTGTAGTAATCATTACAACAAGAAATGAAAGCATACGGAACATATATCCAGTTGGTTCTGTATTTCGGATAAAGCTATTGAATGCAAATGAGTCACTTGAACTTCTTAGTTGGAACGCATTTAGAGAAGCAAAACCAAAAGAAGAATACAACGACCTTGCAAAAAGTGTAGCTTTTCATTGTGGAGGACTACCTCTAGCTCTTGAGATCATTGGAAATTGTTTATTTCAAAGTACAAAAGAAGAATGGAATAGTATATTGTGTAAATTAGCGAGAATTCCCCAGCACCATGTTGAACCGAAATTGAAAATAAGCTTTGAGGGATTACGTAATCAAATGGAAAAAGATTTGTTCCTTGATGTGTGTTGTTCCTTTGTTGGTGAAGGCAGAACCTTTGTTAAGAAGATCCTAAATGGCTGTGGAATATACGATGATGATAGCGGAATAAGAGTTCTCATAGAACGTGGTCTCGTAAAAGTTAAAAAGAACAACAAACTTGGAATGCATCATTTGCTACAAAAAATGGGAAGACAAATAATTCATGAAATTGATAAAGATGAAATGTGGAAGGAGCGGCAAATGCGGTTTGATGGTGCAGGATATGTGTTGACAAATAATAGAGGGACGAGAGTAACTGATCGATTGCCTGTTAAATTGCGTTCAACCAGAAGAGAACCATCAAGACTGCAGAAACTTGATGGAAATTCTGAGTACCATTCTAAGAAACTGAGATGGATCAGTTTGCAAGGGTTTCATGAAAATTACCAAATATTTAACGAGTTTAGTCTGCATGATGCAATAGCTATTGATTTAGATCACAATCTTCTTCAATTCGACTGGAAACAACCACAGGTTTTGAGGTGGCTAAAAGTCCTTAATCTTAGTCACTCTAAGTATTTAACAGAAACCCCTGATTTTTCCGGATTACAAAGTCTTGAACAGCTTTTTCTCAAGAATTGTCAAAGATTACGCAAAGTACACCGATCTATTGGATGTCTCTGCTATCTTATTCTGCTAAATTTGAAGAATTGTACAAGCCTAAGCAATCTCCCTCGAGAGATATATACGTTGAACTCTTTAAGAACTCTTATCCTCTCTGGGTGTTCCAAGATTGACCTCATGGAAAAAGATATTGTACGAATGAAATCCTTGATAACTCTAATTGCTGAAAATACAGTTGTGAAACAAGTGCCTTTTTCAATTGTAAGCTCAAAAGCCATTGGATATATATCCCTACGAGGATTTGAGAGATTTTCATGTAATCTTTTTCCTTCAATCATTATTCGGTCTTGA 1860 0.3769 MFCLYITKLSHLMYVFRRVILERPSKQLHTKHSRDKNWSMVCPGGATHSPKLQISLDWMTAITVGLQSRVEDVIQIMEKKSWRVFTIVIFGRGGSGKTTLAKAIYNQIHGTFTEKSFIEDIAQVRRNRAYAHLQKLLSDVLKTKVEMHSFEMGANMIRERLSGKRMLIVLDDLNEYTPFLELCACFGGGTVVIITTRNESIRNIYPVGSVFRIKLLNANESLELLSWNAFREAKPKEEYNDLAKSVAFHCGGLPLALEIIGNCLFQSTKEEWNSILCKLARIPQHHVEPKLKISFEGLRNQMEKDLFLDVCCSFVGEGRTFVKKILNGCGIYDDDSGIRVLIERGLVKVKKNNKLGMHHLLQKMGRQIIHEIDKDEMWKERQMRFDGAGYVLTNNRGTRVTDRLPVKLRSTRREPSRLQKLDGNSEYHSKKLRWISLQGFHENYQIFNEFSLHDAIAIDLDHNLLQFDWKQPQVLRWLKVLNLSHSKYLTETPDFSGLQSLEQLFLKNCQRLRKVHRSIGCLCYLILLNLKNCTSLSNLPREIYTLNSLRTLILSGCSKIDLMEKDIVRMKSLITLIAENTVVKQVPFSIVSSKAIGYISLRGFERFSCNLFPSIIIRS 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00577 619 Gene3D - 52 205 IPR027417 -
Viun10g00577 619 SUPERFAMILY "Winged helix" DNA-binding domain 289 382 IPR036390 -
Viun10g00577 619 Gene3D - 215 299 IPR042197 -
Viun10g00577 619 Pfam NB-ARC domain 69 285 IPR002182 GO:0043531
Viun10g00577 619 SUPERFAMILY L domain-like 423 604 - -
Viun10g00577 619 Gene3D Ribonuclease Inhibitor 387 613 IPR032675 -
Viun10g00577 619 PRINTS Disease resistance protein signature 160 174 - -
Viun10g00577 619 PRINTS Disease resistance protein signature 250 264 - -
Viun10g00577 619 PRINTS Disease resistance protein signature 86 101 - -
Viun10g00577 619 PRINTS Disease resistance protein signature 544 560 - -
Viun10g00577 619 SMART AAA_5 83 219 IPR003593 GO:0016887
Viun10g00577 619 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 54 566 IPR044974 GO:0006952
Viun10g00577 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 309 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00577 Viun-Chr10 5300984 5304881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00577 489 603 WRKY Transcription Factor Family AT5G45050 33.043 1.17e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00577 - - pvu:PHAVU_010G029600g 634.409