Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00573 ATGGAATCAGCGTCTTCATCTTTCCAACACCAACGGATGTACGATGTGCTCATCAACTTTGCTGGAGAAGACATCCAAAGGAAATTTGTTTCTCATCTCGACTCTGTCCTCACTTCTGTTGGAATCTCCACTTTCCTTCACCACCAGAATGCAGTGAAGGAAATGTATACCGAAGAACCTATCCTGAATATGTGTCAGGTAGTAATAGTTGTTTTCACCAAAACCTATTCTCAATCTGCCTGGTGTCTTCATCAACTTCAACAAATCATTCAGTGGCACGAAACCTATCGTCGACATGTTCTGCCTGTATACTACGAAATTCAGCCATCTGATGTACGTCTTCAGAAAGGTGATTTTGGAAAAGCCTTCACAGAAACTGCTCACCAAACGTTCTCAGGAAAACAACTGGAGCATGGCATGTCCAGGTGGAGATACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCAGAACTAGTGGACGCAATTGTTAAGAGCGTTCTTAATTTATCAGTTTTGTCTGCTACTAATTTTCCAGTTGGATTACAGTCCCACGTGGAAGATGTGATTCGAACTATAAAAAATAAATCCACGGAAGTTTGTACGATAGGGATATGTGGAATGGAAGGATCTGGTAAAACCACCATTGCCAAAGCCATCTACAACCATATTCATGGCACATTCAAGGAAAAAAGTTTCATTGAAGATATTGCGCGAGTTAGTCGAACCAAAGGGTATGCTCATTTACAAGGACAACTTCTGTCGGATATCCTTAAATCAAAGGTGGAGATACATAGCGTTGAGATGGGAAGACGTATGCTTCAGCAAAGGCTTCTTGGTAAAAGGGTGTTGATTGTACTTGACAATATAGATGAGAAAGCTCCATTATTAGATCTTTGGAGAAATCATGCATGGTTCAATAAAGGAACTGTAATAATAATTACAACAGCACATGAACACCTACTAAGGACGAGGATAGCTCAAGATGATTCTATTTTTCGGATAAACGTAATGAACGAAAATGAGTCGCTTGAGCTTCTTAGCTGGCACGCATTTAGAGAAGCAAAACCAAAAGCAGAATACGACGACCTTGCAAAGGAAGTAGTTGCTTATTGTGGAGGACTACCTCTGGCTCTTGAAGTCATTGGAAGTAGTTTATTTGAAAGGACGAAAGAAGAATGGAGGTGGAAAGTGTCACTATTAGAGAAAATTCCCATGTATGATGTTCAAAAGAAATTGAAAACAAGCTTTGGAGGTTTACATAATCTAATGGAAATTGATTTATTTCTTGACGTATGTTGTTCCTTTGTTGGTAAGGACAGAGCCTATGTTACGAAGATTCTAAAGAGCTGTGGAGTAGATGCTGATAATGGAATAAGATTTCTCATAGATCGTAACCTCATCAAAGCTAAAAGGAACAACAAACTTACAATGCATCCTTTGTTACAAGACATGGGAAGAGAAATTGTTCATAAATTTATACAAGAGGAAGTTTGGATGAAGAGTCCACGGTTTGATCATTCATATGTATTGACAAATAATACAGGGAAGAAATCCTCTAGGGAATTGCCTGTGAAACTTCTGTCATCCATAAGAGAACCATCAGGACTGCTGAAACTCGCTCAAAATTCTGAGTGTCGCTCTAAGAAATTGAGATGGATGAGTTTGCAAGGGTTTTCTTCAAAAAATCTATCTATCGACTTTGATCTGAATGATGCAATAGCAATTGATTTAAAACGCAGTCTTCTTCGACTCGTCTGGAAACAACCCCAGTTTTTAATGTGGCTAAAAGTTCTTAATCTTAGTCACTCCAAGAATTTAACACAAACCCCTGACTTTATCGGACTACCACGTCTTGAACGTCTCATTCTCAAAGATTGTCCACGATTGCACGAACTGCACCATTCTATTGGATTTCTCAGAAATCTTATACTGCTAAATCTGAAGGACTGTACAGGTCTAAGATATCTCCCTAAGGAGATAAGGAAGTTGAAATCTTTAAAATCTCTCATTCTTTCTGGTTGTTTGAAGATTCTCCTATTGGAAAAAGATATGATGCAAATGAAATCCCTGATAACTCTAGTTGCTGAGAATAAACCTATGAAACAAGTGCCTTTTTCAATTGTAAACTCAGAAAGCATTGGATATATATCCCTACGTCGATTTGAGGGATTGTTACGTAATCTTTTTCCTTCTATCATTCGGTCTTGGATGTCGCCAACAATGAATCCCATATCTTATATTCATTCAATGTGCATGGATATCGATAATAGTTGGGATGATATTGAACCATTGCATGGCAGCCTCAAAAATCTTCGAAGTGTTTTGGTGCAATGTGACACCGAGTTCCAACTATCTAAACAAGTACAAAATATTCTGGTAGAATATTTTGCATCTATTATAGAACCAGAAATTTCAAAGCAACAACTCAGGTGTTCTTTGATTGGTGTCGGAGCATACGATGAATTCTTCAATGTTTTCAGCGATAACATACCTAAGGATTTGGCATACAGTGAGTGGTGTGATGTTTCTCTCCCAGTTGTCAATGAAACTTATTGGTTGGCCCATATGGGTGAGGGACATTCTGTTTCCTTCACAGTGCCCGAGAATCGTGTCATGAAGGGAATGGCTTTGTGTGTGTTTTATTTATCAACCTCTGAAATCGTGGCAGCTGAATGTCTTAGAAGTGTCTTAATTGTTAATTACACAAAGTGCACATTGCATATACACAACAATGACACAATCATATCCTTTAATGATATAGATTGGCAGGGTATAAAGTCTAATTTAGGATCTGGAGACAAGGTGGAGATTTTTCTGACTTTTGCTCATGGATTGCTTGTGAAGAACACAATTTTCTATTCTATATGCGCGGAATAA 2904 0.3846 MESASSSFQHQRMYDVLINFAGEDIQRKFVSHLDSVLTSVGISTFLHHQNAVKEMYTEEPILNMCQVVIVVFTKTYSQSAWCLHQLQQIIQWHETYRRHVLPVYYEIQPSDVRLQKGDFGKAFTETAHQTFSGKQLEHGMSRWRYALTKAANFFGWDESNHRSDAELVDAIVKSVLNLSVLSATNFPVGLQSHVEDVIRTIKNKSTEVCTIGICGMEGSGKTTIAKAIYNHIHGTFKEKSFIEDIARVSRTKGYAHLQGQLLSDILKSKVEIHSVEMGRRMLQQRLLGKRVLIVLDNIDEKAPLLDLWRNHAWFNKGTVIIITTAHEHLLRTRIAQDDSIFRINVMNENESLELLSWHAFREAKPKAEYDDLAKEVVAYCGGLPLALEVIGSSLFERTKEEWRWKVSLLEKIPMYDVQKKLKTSFGGLHNLMEIDLFLDVCCSFVGKDRAYVTKILKSCGVDADNGIRFLIDRNLIKAKRNNKLTMHPLLQDMGREIVHKFIQEEVWMKSPRFDHSYVLTNNTGKKSSRELPVKLLSSIREPSGLLKLAQNSECRSKKLRWMSLQGFSSKNLSIDFDLNDAIAIDLKRSLLRLVWKQPQFLMWLKVLNLSHSKNLTQTPDFIGLPRLERLILKDCPRLHELHHSIGFLRNLILLNLKDCTGLRYLPKEIRKLKSLKSLILSGCLKILLLEKDMMQMKSLITLVAENKPMKQVPFSIVNSESIGYISLRRFEGLLRNLFPSIIRSWMSPTMNPISYIHSMCMDIDNSWDDIEPLHGSLKNLRSVLVQCDTEFQLSKQVQNILVEYFASIIEPEISKQQLRCSLIGVGAYDEFFNVFSDNIPKDLAYSEWCDVSLPVVNETYWLAHMGEGHSVSFTVPENRVMKGMALCVFYLSTSEIVAAECLRSVLIVNYTKCTLHIHNNDTIISFNDIDWQGIKSNLGSGDKVEIFLTFAHGLLVKNTIFYSICAE 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00573 967 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Viun10g00573 967 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 431 IPR027417 -
Viun10g00573 967 Gene3D - 345 429 IPR042197 -
Viun10g00573 967 Gene3D - 177 338 IPR027417 -
Viun10g00573 967 Gene3D Ribonuclease Inhibitor 540 814 IPR032675 -
Viun10g00573 967 SUPERFAMILY L domain-like 554 730 - -
Viun10g00573 967 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Viun10g00573 967 PRINTS Disease resistance protein signature 285 299 - -
Viun10g00573 967 PRINTS Disease resistance protein signature 670 686 - -
Viun10g00573 967 PRINTS Disease resistance protein signature 380 394 - -
Viun10g00573 967 PRINTS Disease resistance protein signature 210 225 - -
Viun10g00573 967 Gene3D - 7 176 IPR035897 -
Viun10g00573 967 Pfam NB-ARC domain 191 423 IPR002182 GO:0043531
Viun10g00573 967 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 706 IPR044974 GO:0006952
Viun10g00573 967 Pfam TIR domain 14 177 IPR000157 GO:0007165
Viun10g00573 967 SMART till_3 13 153 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00573 Viun-Chr10 5291919 5295599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00573 8 759 WRKY Transcription Factor Family AT4G12020 25.791 7.49e-54 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00573 - - vun:114165880 1245.72