Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00570 ATGGAATTCGCAACTTCATCATCCAAACTCCCACGCAAGTACGATGTGCTCATCAGCTTCAATGGAGACGACATCCGCAGGAAATTTGTTTCTCATCTCGATTCTGCTCTCTCTGCTGTTGGACTCACCACTCTCCTTCATTACGAAAATGCAGTGAAGTCAACGCATATCCAACAACCTATTCTCAATCTGTGTCGAGTAGTAATAGTTGTTTTCACCAAAACATATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATTCAATGGCACCAAACTTATTGCCGACATGTTCTGCCTGTATATTATGAAATTCAGCCATCTCATGTACGTATTCAGCAGGGTGATTTTGGAATGGCCTTCAAAACAACTGCACAACAAACATTTTCAGAACACGAACTGGAGCATGGCTTGTCCAGTTGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCTGAACTGGTGGACAAAATAGTCAAGAGCGTTCTTAATTTATCAGCTTTGTCTGCTACCAAATTCCCAGTTGGATTACAAGACCCAGTGGAATTACTACTTCAAGCTATAAACAATAAGTCCATGGATGTTTGTACAATAGGGGTATGTGGAATGGGAGGATCGGGTAAAACCACCCTTGCCAAAGCCATCTACCATCAAATTCATGGTACATTCATGCAGAAAAGTTTCATTGAAGATATTGCACAAGTTAGTAAACCAAGAGGGCGTATTCATTTACAGCAACAACTTCTTTCAGATGTCCTAAAAACAAAGGTAGAGATACACAGCGTTGAGATGGGGAGAAGTATGATTCGAGAAAGACTTTTTCGGAAGAGGGTGCTCATTGTACTTGACGATATGGATGACTATCTTCCATTATTAGATCTAAGGAACAGTCGTTCATGGTTAAGTGAAGGAACTGTAATAATCATCACAACAAGAGACAGACACTTACTGAGAAAACATCAAGTTGATTTTGTTTTTGAGATGAATCTATTGAATGAAAATGAATCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAAGAATACCATGACCTTGCAAAAGCAATAGTTACCCACTGTGGAGGACTACCTCTGGCTCTTGAAGTCATTGGAAGTACTTTATTTGAAAGTACGGAAGAGGAATGGCAAACTGTATTGTTTGAATTAGAGGAAATTCCCATGGATGATGTTCAACTAAAATTGAAAATAAGCTTGGACCGTTTACACAGTCAAATGGAAAAGGATTTATTCCTTGATGTATGTTGTTACTTTGTTGGTAAGGACAGAGCATATGCTACGAAGATCCTAAATGGCTCTGGAGTAGACGCTGATAATGAAATAAGAACTCAACATGGCTATATAGTAGATGCTGATACTGGAATAAGAGTTCTCATGGAGCGTAACCTCATTAAAGTTAAAAGCAATAACAAATTTGGAATGCATCCTTTGCTACAAGAAATGGGAATAGGATTTTTTCGTGAAATTTCCGGAGAGAAACGTTTGAAGAATAGTCAACTGTTGTTTGATGTGGACGTAGAATATGCACTGAAAGTAAATTCGGTAAGAACATTCTTTGTATTTGGTTTGAAACTTCTTTTGAAAGTGTTTAATTTCATGCGCCCAATACACTGTTTTTCTTTGGTCTTTAAATCACAGGGGAGAAAATCCTTTGAGGTATTGCCTGTGAAATTGCTTTCAACCAGAAGAGAAATATCAAGACAGACCAAAGATGCTCTAAATTCTGAGTACCTTCCTCCGAAATTGAGATGGATAACTCTGCATGGGTTTTCTTCACAATACTTACCTAACGGCTTTAATGTGCAAGATGCAATAGCTATTGATCTAAAACACAGTCTTCTTCGATTCTTCTGGGAAGAACCCCAGGTTTTGAGATCGCTAAAAGTCCTTAACCTTAGTCATTCCATGTACTTGACAGAAACACCTGACTTTTCGAGACTACCAAGTCTTGAACAGCTCATTCTAAAAGATTGTCCCAGATTGCGCATAGTACACTCATCTATTGGAGATCTCTGTTATCTTATACTGCTTAATTTGAAGGACTGTCAATGTCTAAGCAATCTACCCCGAGAGATATATAAGTTGAAATCTCTAAGAACTCTTATTCTCTCTGGGTGTTCGAAGATTTGCCGAATGGAAAAAGATATACTGCGAATGAAATCCTTGATAACTCTAATCGCTGAAAATACAGCTGCGAAACAAGTGCCTTTTTCAATTGTAAGTTCAAAAGCCATTGGATATATATCCCTACGAGGATTTGAGAGATTATCATATAATAGCTGGGATGATATTGTGCCATTGCTTGGTAGCTTGACAAATCTTCGAAGTGTTTTGGTACAATGTGACACTGAGTTTCAACTATCTAAGCAAGTACAAAACATTCTGGTCGAATATTTTTCAAATATTACAGAATCAGGAATTTCAATGCAGCAGTTCAGGTGTTCTTTGATTGGTGTTGGAGCATACCATGAATTCTTCAATGTTGTTAGTGATAACATATCTGAGGTATTGGCAGGCGGTGAGTGTTGTGATGCCTCTCTTCAGTGTGACAACCATTCTTATTGGTTAGCCTATATCGGTGAAGGAGATTCTGTTTCTTTCACTATGCCACCACATCATGACGTGAAGGGAATGATTTTGTGTGTTATTTATTTATCAATCCCTGAAATTGTGGCAACCGAAGGTCTTAGAAGTGTCTTAATTGTTAATTACACAAAGTGCACATTGCATGTACACATGCATGGCACAATAATTTGCTTTAATGATATAGATTGGGAAGGTATAAAATCAAACCTTCGATCTGGAGACAAGGTGGAGATTTTTGTGACGTTTGGTCATGGATTGGTGGTAAAGAACACAAGACTCTATCTTATATGTGGTGAATCAAATTACTTGGAAACAAAACCTAGGCTAAAGAAAAATTTGGTCATTAGATTCATAAAGAAAGTTGTAGAATGA 3030 0.3815 MEFATSSSKLPRKYDVLISFNGDDIRRKFVSHLDSALSAVGLTTLLHYENAVKSTHIQQPILNLCRVVIVVFTKTYSQSAWCLHQLQQIIQWHQTYCRHVLPVYYEIQPSHVRIQQGDFGMAFKTTAQQTFSEHELEHGLSSWSHALTKAANFFGWDESNHRSDAELVDKIVKSVLNLSALSATKFPVGLQDPVELLLQAINNKSMDVCTIGVCGMGGSGKTTLAKAIYHQIHGTFMQKSFIEDIAQVSKPRGRIHLQQQLLSDVLKTKVEIHSVEMGRSMIRERLFRKRVLIVLDDMDDYLPLLDLRNSRSWLSEGTVIIITTRDRHLLRKHQVDFVFEMNLLNENESLELLSWHAFREAKPKEEYHDLAKAIVTHCGGLPLALEVIGSTLFESTEEEWQTVLFELEEIPMDDVQLKLKISLDRLHSQMEKDLFLDVCCYFVGKDRAYATKILNGSGVDADNEIRTQHGYIVDADTGIRVLMERNLIKVKSNNKFGMHPLLQEMGIGFFREISGEKRLKNSQLLFDVDVEYALKVNSVRTFFVFGLKLLLKVFNFMRPIHCFSLVFKSQGRKSFEVLPVKLLSTRREISRQTKDALNSEYLPPKLRWITLHGFSSQYLPNGFNVQDAIAIDLKHSLLRFFWEEPQVLRSLKVLNLSHSMYLTETPDFSRLPSLEQLILKDCPRLRIVHSSIGDLCYLILLNLKDCQCLSNLPREIYKLKSLRTLILSGCSKICRMEKDILRMKSLITLIAENTAAKQVPFSIVSSKAIGYISLRGFERLSYNSWDDIVPLLGSLTNLRSVLVQCDTEFQLSKQVQNILVEYFSNITESGISMQQFRCSLIGVGAYHEFFNVVSDNISEVLAGGECCDASLQCDNHSYWLAYIGEGDSVSFTMPPHHDVKGMILCVIYLSIPEIVATEGLRSVLIVNYTKCTLHVHMHGTIICFNDIDWEGIKSNLRSGDKVEIFVTFGHGLVVKNTRLYLICGESNYLETKPRLKKNLVIRFIKKVVE 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00570 1009 Pfam NB-ARC domain 193 430 IPR002182 GO:0043531
Viun10g00570 1009 Gene3D - 7 177 IPR035897 -
Viun10g00570 1009 Pfam TIR domain 13 177 IPR000157 GO:0007165
Viun10g00570 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 437 IPR027417 -
Viun10g00570 1009 Gene3D Ribonuclease Inhibitor 587 839 IPR032675 -
Viun10g00570 1009 Gene3D - 343 427 IPR042197 -
Viun10g00570 1009 SMART AAA_5 207 345 IPR003593 GO:0016887
Viun10g00570 1009 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Viun10g00570 1009 PRINTS Disease resistance protein signature 717 733 - -
Viun10g00570 1009 PRINTS Disease resistance protein signature 285 299 - -
Viun10g00570 1009 PRINTS Disease resistance protein signature 378 392 - -
Viun10g00570 1009 PRINTS Disease resistance protein signature 210 225 - -
Viun10g00570 1009 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 156 IPR035897 -
Viun10g00570 1009 SMART till_3 13 153 IPR000157 GO:0007165
Viun10g00570 1009 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 752 IPR044974 GO:0006952
Viun10g00570 1009 SUPERFAMILY L domain-like 600 802 - -
Viun10g00570 1009 Gene3D - 178 338 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00570 Viun-Chr10 5274776 5278739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00570 12 763 WRKY Transcription Factor Family AT4G12020 26.858 3.77e-57 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00570 - - vun:114165880 1955.64