Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00560 ATGGATGTTTGTACGATAGGGATATGTGGAATTGAAGGATCAGGTAAAACCACCCTTGCCAAAGCCATCTACCATCAAATTCATGGTACATTCACGAAGAAAATTTTCATTGAAGATGTTTCAGAAGTTAGTCGAACAAGAAGTCATGTTAGTTTACAAGAACAACTTCTTTTAGATATCTTAAAAATAAAGGTGGAGATACGTAGCGTTGAGATGGGAAGAAGAATGATTCGGGAAAGACTTTCTGGCAAAAGGCTACTCATTGTACTCGACGATATGAATGCGTATGGTCCATTTTTAGACCTATACAGATGTCGTTCTAGATTCAGTAGAGGAACTGTAATAATCATTACAACGAGAGATGAAGACCTACTTAGGATTCATCAAGTTGATTCTGTTCTTCAGCTAAAGCTAATGAGCGCAAAGGAGTCGCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCTATTAAAGTATAA 480 0.375 MDVCTIGICGIEGSGKTTLAKAIYHQIHGTFTKKIFIEDVSEVSRTRSHVSLQEQLLLDILKIKVEIRSVEMGRRMIRERLSGKRLLIVLDDMNAYGPFLDLYRCRSRFSRGTVIIITTRDEDLLRIHQVDSVLQLKLMSAKESLELLSWHAFREAIKV 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00560 159 Pfam NB-ARC domain 4 155 IPR002182 GO:0043531
Viun10g00560 159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 156 IPR027417 -
Viun10g00560 159 Gene3D - 1 134 IPR027417 -
Viun10g00560 159 SMART AAA_5 2 140 IPR003593 GO:0016887
Viun10g00560 159 PRINTS Disease resistance protein signature 80 94 - -
Viun10g00560 159 PRINTS Disease resistance protein signature 5 20 - -
Viun10g00560 159 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 154 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00560 Viun-Chr10 5142894 5143373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00560 1 149 WRKY Transcription Factor Family AT5G45050 31.333 5.85e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00560 - - vun:114165128 310.071