Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00553 ATGTCTTACACCTCATCTTCCTCAAAATCTAAACCCCAATGGGTATACGATGTGTTCATCAGTTTCCGAGGGGAAGACACTCGGAAGAATTTCGTTTCTCATCTCTATTCCGCTCTTACAAATGCCGGGGTTAACACTTTTCTGGACGATAAGAAGCTTGCCAAGGGGCAGCAGCTGAAACCAGAACTGTTGCATTCAATAGAAGGGTCTCAAATTTCCATTGTTGTTTTCTCCGAAAACTACATATTCTCTAAATGGTGTCTTGACGAACTCGTCAAAATCATGGAATGCCATGCTTTCAGAGGTCAAGTGGTTTTGCCCGTATTTTACGACGTTTTCCCTAGTTTTCTGCGTAACCTGAACGATGTTTCTTTCGAAGAAGATAGTGATCTCAACCGGGTGAAACAATGGAAGAAGGCACTGAGTGAAGCAGCAGGTTTTGTAGGTTGGGATGTTTCAAATTACAGAAATGAAAACTTTGTTGTGAAGGAAATGGTTACTGCTGTTTTGGAAAGACTAGATAGAACATACATGTCTATTACGGACTTTCCAGTTGGATTGGAATATCGTGTGGAACATTGTATTGGCTTTCTAAGAAAGCAAACAAAAGGAGCTTATATATTAGGGATTTGGGGAATGGGAGGGATTGGTAAAACAACCATAGCCAAAGCCATCTACAATGAAATTCGATATGAATTTAAACATAAAAGTTTCCTAGCAAATATTAGAGAAGTTTGGCAAAGAGATTTTGGGCGGATTGATTTACAAGAACGACTTCTTTCAGATATCCTCAAAACTGAAAAGGTGAAGGTTTATAGCATTGATTGGGGAAAAGCTATGATCAAGGAAACGCTTTGCACAAAAAGAGTACTTGTTGTACTCGATGATGTGAATACATTTGAACAATTAAATGCACTATCTGCAAATAGTAATGGGATTGCTCAAGGAAGTGTAATAATCATTACAACAAGAGATGTACGCCTACTCAATATGCTTGATGTTGAACATGTATATGAAGTGGAGGAAATGAATGAGATTGAGTCCCTTGAGCTCTTCAGTTGGCATGCTTTTAAGGAAGCAAATCCACCAGAAGGTTTCCTTGAACTCTCAAAACAAGTAGTCACTTACTGTGGAGCACTACCTCTAGCTCTTGAAATTCTTGGATCTTATCTATACAAGAGAAGAGTAAAAGAGTGGCAAAGTGTATTATCAAAACTAAAAGAAATACCAAATGATAAAATACAAGAGAAATTGAAAATAAGCTATGATGGTTTAACCGATCATACGGAGAAGGACATATTCCTTGATGTATGTTGCTTCTTTATTGGTAAGGACAGAGGCTATGTCACAGAGATACTAAATGGCTGTGGACTTCATGCTGAAATCGGAATAACAGTCCTGGTAGAAAGGAGCCTCATAAAAATTGAAAAGAATAACAAACTCGGAATTCATGATTTGCTTCGAGACATGGGCAGAGAAATTGTTCGTGGAAGTTCACCACTAGAACCACAGAAGCGCAGTCGGTTGTGGGTTCATGATGATGTACTTGATATATTGACAGAACATACTGGAACAGGAGTCATTGAGGGATTGGCTTTGAAGATGCAAAGAACCAGCGGAGTTTGTTTCGGTACTGAAACATTTGAGAAAATGAAGAGACTCAGACTTCTGCAACTTGATCATGTACAACTAGCTGGAGATTATGGGCGTCTTCCCAAACAACTGAGATGGGTTCATTGGAAAGCATTTTCATTAACTCACATGCCGGAAAACTTTTATCAGGAAAACATAGTCGCCATTGACTTAAAATATAGTTATCTTAAACTAGTATGGAAGGTGCCCCCGTTTCTGGAGAGGCTAAAATTTCTCAATCTTAGTCATTCCAGGTACTTATCAAAGACCCCAGATTTTTCAAAACTACCAAATCTTGAGAAGCTCATTCTCAAAGATTGTCCAAGCTTGTATGAAGTACACCATTCTATTGGAGATCTAAATAACCTCCTTCTTCTAAACTTGAAGGATTGTACGTGCCTTGGCAATCTTCCAATGGTAATCTATAAGTTAAAGTCATTACAAACCCTCATCCTCTCTGGTTGTTCAAATATTGACAAGTTAGAAGAAGCTATAGGAAAAATGGAATCCTTAACAACTCTAATTGCGGACAATACTAGTATAAAACAAGTGCCTTTTGCCATAGTAAGATCCAAAAAGATTGGATATATATCCCTTTGTGGATATGAAGGATTGACACGAAATGTATTTCCTTCTCTCATATGGTCTTGGATGTCACATACAAGAGGAGCTTTATCCTGTATTCAACCATTTGGGATCACGCCAACATCTATAGTTGCCTTGGATATACAGGATACTAATTTGGTTAACCTATTATCAAAGCTCAGTGAATTTTCAAAACTTCGAAGCATTTCTGTACAATGCGACTCAGATTTTCAACTAACTCAAGAACTAAGATCAATTCTGCATGAGTTATGCAATGTAAACTCTTCTGAATTGGAAAATGCATATCTATCACCAATTTCAGAAAATTCTATGGTATCGTGTTTGATTGGAATGGGAAGCTACCAGCAAGTCTTCGACATGCTTAGCAATAGCATATCAGAGGTATTAAGAACCAATAGTTCTAATGATTTTGTGCTTCCTGGGGACAATTATCCTTATTGGTTAGCCTATACAGGGGAAGGTCATTCAGTACCTTTTCAAGTTCCTGAAGATGGTGATTGTCGCATGAACGGAATGCTGTTGTGTATTGTTTATTCATCAACCCCTGAAAACATGGCAACTCAAGCTCTTACTAATGTCTTCATCTTTAATTACACAAAGTGCACCATTGAGATATTTAAGCATGCAACAACAATGTTATTTAGTGATGAAGATTGGCAGGGTGTAATATCAAGCCTAGGACCCGGAGACAACGTGGAGATTTTTGTAGGTGTTGGTGATGGGATCACCGCTAAGAAAACAGCTGTGTATCTGATATATGGTCAGTCAATTACAATGAGATTGGAGTCACTTGGACTGAATGCACAAGAATCACCTGAGCTGAGTGTGATACTGTCACCTAAAATGAGTGCACAACCAACCACAGATGTGGAAATGGAGGCAAAGAAGCCGAAGAAAAATACATTTGCCAAAATTAGAAAAAAAGTGAGAGTATGTTCATGTTTGAAGTAG 3189 0.3819 MSYTSSSSKSKPQWVYDVFISFRGEDTRKNFVSHLYSALTNAGVNTFLDDKKLAKGQQLKPELLHSIEGSQISIVVFSENYIFSKWCLDELVKIMECHAFRGQVVLPVFYDVFPSFLRNLNDVSFEEDSDLNRVKQWKKALSEAAGFVGWDVSNYRNENFVVKEMVTAVLERLDRTYMSITDFPVGLEYRVEHCIGFLRKQTKGAYILGIWGMGGIGKTTIAKAIYNEIRYEFKHKSFLANIREVWQRDFGRIDLQERLLSDILKTEKVKVYSIDWGKAMIKETLCTKRVLVVLDDVNTFEQLNALSANSNGIAQGSVIIITTRDVRLLNMLDVEHVYEVEEMNEIESLELFSWHAFKEANPPEGFLELSKQVVTYCGALPLALEILGSYLYKRRVKEWQSVLSKLKEIPNDKIQEKLKISYDGLTDHTEKDIFLDVCCFFIGKDRGYVTEILNGCGLHAEIGITVLVERSLIKIEKNNKLGIHDLLRDMGREIVRGSSPLEPQKRSRLWVHDDVLDILTEHTGTGVIEGLALKMQRTSGVCFGTETFEKMKRLRLLQLDHVQLAGDYGRLPKQLRWVHWKAFSLTHMPENFYQENIVAIDLKYSYLKLVWKVPPFLERLKFLNLSHSRYLSKTPDFSKLPNLEKLILKDCPSLYEVHHSIGDLNNLLLLNLKDCTCLGNLPMVIYKLKSLQTLILSGCSNIDKLEEAIGKMESLTTLIADNTSIKQVPFAIVRSKKIGYISLCGYEGLTRNVFPSLIWSWMSHTRGALSCIQPFGITPTSIVALDIQDTNLVNLLSKLSEFSKLRSISVQCDSDFQLTQELRSILHELCNVNSSELENAYLSPISENSMVSCLIGMGSYQQVFDMLSNSISEVLRTNSSNDFVLPGDNYPYWLAYTGEGHSVPFQVPEDGDCRMNGMLLCIVYSSTPENMATQALTNVFIFNYTKCTIEIFKHATTMLFSDEDWQGVISSLGPGDNVEIFVGVGDGITAKKTAVYLIYGQSITMRLESLGLNAQESPELSVILSPKMSAQPTTDVEMEAKKPKKNTFAKIRKKVRVCSCLK 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00553 1062 Gene3D - 10 178 IPR035897 -
Viun10g00553 1062 SMART till_3 15 147 IPR000157 GO:0007165
Viun10g00553 1062 ProSiteProfiles TIR domain profile. 14 173 IPR000157 GO:0007165
Viun10g00553 1062 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 175 - -
Viun10g00553 1062 Pfam NB-ARC domain 188 415 IPR002182 GO:0043531
Viun10g00553 1062 PRINTS Disease resistance protein signature 377 391 - -
Viun10g00553 1062 PRINTS Disease resistance protein signature 284 298 - -
Viun10g00553 1062 PRINTS Disease resistance protein signature 686 702 - -
Viun10g00553 1062 PRINTS Disease resistance protein signature 207 222 - -
Viun10g00553 1062 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 150 IPR035897 -
Viun10g00553 1062 SUPERFAMILY L domain-like 496 819 - -
Viun10g00553 1062 Gene3D - 179 338 IPR027417 -
Viun10g00553 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 436 IPR027417 -
Viun10g00553 1062 Gene3D - 342 426 IPR042197 -
Viun10g00553 1062 Gene3D Ribonuclease Inhibitor 705 856 IPR032675 -
Viun10g00553 1062 Gene3D Ribonuclease Inhibitor 542 704 IPR032675 -
Viun10g00553 1062 Pfam TIR domain 16 182 IPR000157 GO:0007165
Viun10g00553 1062 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 727 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00553 Viun-Chr10 5120507 5131292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00553 16 732 WRKY Transcription Factor Family AT4G12020 30.853 1.14e-83 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00553 - - vra:106773318 1877.83