LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g00549	ATGGCATCTGCGTCTTCTTCTTCGTCTTTCTCAAAATTCAGAATCGAAGGCGACGTGTTCATCCATTGTATGGGAGACGACATCCGTAGGAATTTCGTTTCTCATCTCAGTTCTGCCCTTTTGCAGGCTGGAGTAAAACCTTACCTCCTTGCCGTGGATATGCAGCGGGAACAATTTGTAGCATCAATTGAAGGGTTTCAGATTGGAATAGTTGTTTTCACCAAAACATACTTTGAATCTTTTCGGAGTGTTGATGAACTTGTGAGAATCATTGAATGCCACGAAACTCACGGCCTAATGGTTATGCCCGTGTTTTACGAAATTGACCGATCCGATTTTGGAAATACGTTGAAAGCAACTGCAAGAGAGGTCATGAAAATTGAACACATAATTTGGTCAGGAGAATATCAGAAAACATGGTTCCAGAGGTGGAATAGCGCACTCATCAAAGCTGGAACTTTGCCTAATTGGGAGGAGAGCGAACACAGGAGTGATGCTGAACTAGTGGAGGAAATTGTTAAGTCTGTTCTCGCCAAACTAGACTGCCCCTTGTGTACAACTAAATTTCCTGTTGGGTTAGAACCCCACGTGAAAAATGTGATTGGATTGTTTGAAAATCAACCCACCAAAGTTTGTATGATAGGGATATGGGGAATGGGAGGATCGGGTAAAACTACCGTAGCCAAAGCCATATACAATCAGATTCCTTATACATTTGGTGATAAAAATTTCATTCAAGGTATTAAAGAAGTTTGTGAAACAGATGGCAGAGACCTTGTTCATTTACAAGAAAAACTTCCCTCAGGTTCCCTGAAAACAAATGTGACGACAGAGAGTGGTGAGATGAAAAAAATTACGACCGAGAACAGACTTTTTGGAAAAAAGTTGTTCATTGTGCTTGACGATGTCAATGAGATAGACCAACTAAAAGAACTCCGTAGAAATGATAAACAGTTTGGTCAAGGAAGTGTAATAATCATTACAACTAGAAATTTAAACCTGCTTTATCAACTTAATGTTGATTATGTTTATGAGATGGATAAACTGGACGAAAATGACTCCCTTGAGCTTTTTAGCTGGCATGCTTTTGGAGAAGCAAAACCAAAAGAAGACTTCATTAAATTTGCAAGATCTGCAGTTGCTTATTGTGGTGGACTACCACTCGCTCTTGAAGTGCTTGGTTCTTATTTAAGGAAGAGGTCAGTGAATGAATGGAGAAGTGTATTGTCAAAACTAGAAATAATTCCCAATACTCAAGTTCAGAACATCCTAAGAATAAGTTTTGACGGCTTATGTCTAATGGAAAAGGATATATTTCTTGATGTATGTTGTTTTTTTATTGGTAAAGACAGAGACTATGTTACAGAGATACTAAATGGTTGTGGACTACATGCTGATATTGGAATGAAAGTTCTCATAGAACGTGGTCTTCTAAAAATTGAAAAGAACAATGAACTTGGAATGCATTGTTTGCTCCGGGATATGGGACGAGAGATTGTTCGTCAAACCTCAACAATGCAACCTGGGAGGCGCAGAAGATTGTGGCTTCACAAGGATGTGCTCGATGTACTGACAAAGAATAGTGGGACAGAAGCTATCGAGGGACTGTCTCTGAACTGTCAGTTTACCAGAAGTGAGTTCGTCAAAGCTTGTGCTTTTGAGAAGATGAAAAGGTTGAGATTCTTACAACTTGATAATGTACAAGTGACTGGAGATTATGGGTATCTTTCTAAGCAATTGAGATGGATCTACTGGCAAGGATTTCCTTTCAAATACATACCTAACAACTTTTATCTGAAAGAGGCAATTGTGATTGATTTCCAACAGAGTAATCTTAGACAAATGTGGAAAGAACCCCAGGTGTTGCCGTGGCTAAAAATCCTGAATCTTAGTCATTCCAAGTTCTTAATTGAAACTCCCGACTTTTCAAAACTACCAAGTCTTGAAAAGCTCATTGTCAAACATTGTCCAAGATTGTGCAAGGTACACCAATCCATTGGAGATCTCCACAATCTTCTGCTAATAAATTTGAAAGGCTGTAGCAGGCTATGGAATCTCCCAACTGAGACATATAAGTTAAAATCTTTGAAAACTCTCATCCTGTCTGGTTGTTTGAAGATTCACATATTAGAAGAAGATATATTGCGTATGGAATCATTGACAACTCTAATTTCTGAAAGTACTGTTGTGAAACAAGTTCCCTTTTCAATAGTAAGCTCAAAGAGCATTGGATATATACTTCTAGGAGGAAATAATGGATTATCATTTACTGTTTTTAATTCTATCATTTCGTCTTGGATATCACCTAAAATTAATCTCCTGTCTGGTATTCGTCCGTTTCGTGGCTTATCTTCATCTCTAGTTTCCATGAGTATGGAGAATAATGATTTGGGTGATCTAGCACCAATCCTTAGCAGCGATTTAAATATTCTCAATATTTTGGTGCAATGTGACGCAGAGTTTCAAAGATACCAACAAGTAATAGCACTTTTGGACGAGATACGAGATCTAAACTTGACTGAATTTGAAATAAGATCTACACCAGAAACTTCAAAGCATCCTTTAAGACGTTGTTTGATTAAATTCGGAAGTGACCAAGAAAAAGTCTTCGATATTCTCAGCGAGAGCATATTACAGGGATCAGAAAACAGTGCGTCTTGTGATGTTTTTCTCCCTGGTGACAAAGATCCTTATTGGTTAGCTCATATGGGCGAGGCACATTCAGTGACTTTCACTGTACCTGAGGATCGTCACATAAAGGGAATGACTTTGTGTACTGTAAATTTATATAATCCCAGACACTTTACAACAAGTGAATATCTTATTAGTATCTTAATGGTTAATTACACTAAGTGCACCATCCAGATATACAGGAGAAAGACAGTACAATCATTTAGTGATGTAGATTGGCAGGGCATAATATCAAATTTAGGACCTGGAGACAAGGTGGAGGTTTTTGTGATTTTTGGGGATAAATTCCTAGTCAAGAAGACAGCTCTCTATCTAATGTATCATGGATTAATTGACAAGGAAGTCGATCCTTCTCTTGATCCAAAGAATATTGATCTATGTAGCACAGATACTGACACCGTCACTCAAGATGACACGGACGCAGATACAGATACTGACACTGTCACTCAAGATGACACGGACGCAGATACGGATACAGGCACATGCACAAGCACCTCGACTTCGACAATTCGACACGTATAG	3213	0.3853	MASASSSSSFSKFRIEGDVFIHCMGDDIRRNFVSHLSSALLQAGVKPYLLAVDMQREQFVASIEGFQIGIVVFTKTYFESFRSVDELVRIIECHETHGLMVMPVFYEIDRSDFGNTLKATAREVMKIEHIIWSGEYQKTWFQRWNSALIKAGTLPNWEESEHRSDAELVEEIVKSVLAKLDCPLCTTKFPVGLEPHVKNVIGLFENQPTKVCMIGIWGMGGSGKTTVAKAIYNQIPYTFGDKNFIQGIKEVCETDGRDLVHLQEKLPSGSLKTNVTTESGEMKKITTENRLFGKKLFIVLDDVNEIDQLKELRRNDKQFGQGSVIIITTRNLNLLYQLNVDYVYEMDKLDENDSLELFSWHAFGEAKPKEDFIKFARSAVAYCGGLPLALEVLGSYLRKRSVNEWRSVLSKLEIIPNTQVQNILRISFDGLCLMEKDIFLDVCCFFIGKDRDYVTEILNGCGLHADIGMKVLIERGLLKIEKNNELGMHCLLRDMGREIVRQTSTMQPGRRRRLWLHKDVLDVLTKNSGTEAIEGLSLNCQFTRSEFVKACAFEKMKRLRFLQLDNVQVTGDYGYLSKQLRWIYWQGFPFKYIPNNFYLKEAIVIDFQQSNLRQMWKEPQVLPWLKILNLSHSKFLIETPDFSKLPSLEKLIVKHCPRLCKVHQSIGDLHNLLLINLKGCSRLWNLPTETYKLKSLKTLILSGCLKIHILEEDILRMESLTTLISESTVVKQVPFSIVSSKSIGYILLGGNNGLSFTVFNSIISSWISPKINLLSGIRPFRGLSSSLVSMSMENNDLGDLAPILSSDLNILNILVQCDAEFQRYQQVIALLDEIRDLNLTEFEIRSTPETSKHPLRRCLIKFGSDQEKVFDILSESILQGSENSASCDVFLPGDKDPYWLAHMGEAHSVTFTVPEDRHIKGMTLCTVNLYNPRHFTTSEYLISILMVNYTKCTIQIYRRKTVQSFSDVDWQGIISNLGPGDKVEVFVIFGDKFLVKKTALYLMYHGLIDKEVDPSLDPKNIDLCSTDTDTVTQDDTDADTDTDTVTQDDTDADTDTGTCTSTSTSTIRHV	1070

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g00549	1070	Gene3D	Ribonuclease Inhibitor	526	862	IPR032675	-
	Viun10g00549	1070	MobiDBLite	consensus disorder prediction	1051	1070	-	-
	Viun10g00549	1070	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	153	IPR035897	-
	Viun10g00549	1070	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	720	IPR044974	GO:0006952
	Viun10g00549	1070	SUPERFAMILY	L domain-like	513	848	-	-
	Viun10g00549	1070	Gene3D	-	15	176	IPR035897	-
	Viun10g00549	1070	ProSiteProfiles	TIR domain profile.	15	180	IPR000157	GO:0007165
	Viun10g00549	1070	MobiDBLite	consensus disorder prediction	1032	1070	-	-
	Viun10g00549	1070	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	441	IPR027417	-
	Viun10g00549	1070	SMART	till_3	16	154	IPR000157	GO:0007165
	Viun10g00549	1070	MobiDBLite	consensus disorder prediction	1032	1050	-	-
	Viun10g00549	1070	Gene3D	-	348	432	IPR042197	-
	Viun10g00549	1070	Pfam	TIR domain	18	179	IPR000157	GO:0007165
	Viun10g00549	1070	PRINTS	Disease resistance protein signature	213	228	-	-
	Viun10g00549	1070	PRINTS	Disease resistance protein signature	691	707	-	-
	Viun10g00549	1070	PRINTS	Disease resistance protein signature	383	397	-	-
	Viun10g00549	1070	PRINTS	Disease resistance protein signature	290	304	-	-
	Viun10g00549	1070	Gene3D	-	177	343	IPR027417	-
	Viun10g00549	1070	Pfam	NB-ARC domain	196	413	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g00549	Viun-Chr10	5028062	5033696	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun10g00549	18	737	WRKY Transcription Factor Family	AT4G12020	29.719	1.23e-75	272

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g00549	-		-	vun:114167169	2061.96