Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00548 ATGGCATTCGACTCTTCTTCACCATCATCCAAATCCGAACGGATATACGACGTGTTCATCAATTTCAGGGGGGTAGACACCCGCAAGAAGTTCGTTTCTCATCTCCATTCTTCGCTCTCAAAAGCTGGAGTCAAAACGTTCCTTGACGAGGAGAATCTGCTCAAGGGAATGGAGCTGAAAGAACTATTGCGAGCAATTGAAGTGTCTCAGATAGCAATAGTTGTTTTCTCCAAAAGATACGCTGATTCTAGCTGGTGTCTTGAGGAGCTTCAGAAAATCTTTGAGTGCCGCCAAACTTGTGGCCTAAGAGTTGTGCCCGTATTTTACTATGTTGAACCATCCGAAGTTCGTCAGCAGAAGGGTGATTTTGGAGATGCGTTGCGAGCAGCTGCAAGAAGTGGCTATGCAGGAGAACATCTGGAATTCGCGTTGTCGAGTTGGAGACGCACACTCACCGACGCTGCAAATTTGTCTGGGTGGAATCCGAAGGATTGGAGGACTGAAGCTGAGCTAGTGCGTGACATTGTTAACTACGTTATTGCCAATCTTGATTACAATGCCTTGCCTATCACCAAATTTCCTGTTGGATTAGATCATCCGGTGCAAGAAGTGATTAGATTTATTGAAAGAACCAGAAATTCTTGTAAGATAGGGATATGGGGAATGGGAGGATCCGGTAAAACTACGATTGCCAAAACCATCTACAATAAACTTCATCGTTTATTCGAGAATAAAAGTTTCATTGAAAATATTAGAGAAGTTTGTCAAACAGATAGAAGAAGAGGGCTTGTTCGTTTGCAGGAAAAACTTCTTTCTGATATCCTGAAAGTAAAGGTGGAGATACAAAGCAATGGAATCGGACAAGGTATGATTGAGAACAGATTTATTGGAAAAAGGGCGGTCATTGTTCTTGATGATGTGAATAAGTTTGACCAACTACAAGCACTATGCGGAAATACTCAGTGGATGGGTGAAAGAAGCGTAATAATCATTACAACTAGAGATCTACGTTTACTCAAGAGTTTTGAAGTTGATTTTGTTTATGAAATGAAGGAAATGGAAGCAAATGAGTCCCTTGAGCTTTTTTGTAGGCATGCATTCAGAGAAGAAAAACCAAGAGAGGATTTCAAAGAACTTGCAAAAGATGCAGTTGCTTATTGTGGTGGACTACCTCTAGCTCTTGAAGTTCTAGGTTCTTATTTGAGTAAGAGGACAATGATTGAGTGGAGAAGTGTGTTGTCAAAACTAAAAATAAGTCCCAATACCCAAGTCCAAGAGAAACTGAGGATAAGCTTTGACAGTTTATGTGATCAAATGGAAAAGGAAATATTTCTTGATGTATGTTGTGTTTTTATTGGTAAGGACAGAGGGTGTGTCACGGAGGTACTAAATGGTTGTGGACTATTTGCTGATATTGGAATAACTGTCCTCTTAGAGCGTAGCCTCATAAAAGTCGAAAAGAACAACAAACTCAGAATGCATCATTTGCTACAAGACATGGGAAGAGAGATTATTCGCGAAGGTTCAAACAAAGAACCTGGGAAGCGCAGTAGATTATGGTTTCAAGAGGAGGTGCGTGATGTGTTGACAAATAGTACCGGGACAGATGCTATTGAGGGATTGACTCTGAAATTGAATTTAACGAACAGAGAATGCTTTAAAGCTGATGCTTTCGAGGAAATGAGTAGTTTGAGACTGTTGCAACTTCACCATGTAGAACTCACGGGAGATTATGGTTATCTTTCTAAGCAATTGAGATGGATCTATTGGCAAGGGTTTCCTTCAAAATACATACCTGACAACTTTTATCTGGAAGATGCAATTGCAATTAATTTCAAACACAGTAATCTTAGGCAATTGTGGAAAGAACCCAAGGTTTTGTTTATGTTAAAGTTCCTCAATCTTAGTCATTCCAAGTACTTGACTGAAACCCCTAACTTTTCTGGACTACCATATCTTGAAAAGCTCATTCTCAAATATTGTCCAAGTTTGCGCTGTGTACACAAATCGATTGGAGATCTCTGTAAAATTGTGCTGATAAATTTGAAGGATTGTACAAGCCTTAGCAGTCTTCCGAGAGAGATATATAAGTTGAAATCTTTGAAAACTCTCATCCTATCTGGTTGTTCCAAGATTGACACATTGGAAGAAGATATAGTGGAGATGAAATCCTTGACAACTCTAATTGCTGAAAATGCTGTTGCGAAACAAGTGCCCTTTTCAATAGTAAGCTCAAAAAGCATTGGATATCTATTCCCATGTGGGTATGAAGGATTATCCCATGATGTTTTACCTTCTATTATTAGGTCCTGGATGTCACTAACAATGAATCCCCTGTCTTGTATTCATCCGTTATGTGGCATTTCAGCATCTCTAGTTTCCATGAATATGCAAAATATTGATTTGGGTGACCTAGCACCGATCCTTACCAACCTTTTAAATCTTCGAAGTGTTTGGGTGCAGTGTGACACGGAGTTTCAAATAACTAAACAAGTAAGAAAAATTCTGAATGACGTACAAGGGGTACATTTCACTGACTTAGAAATAGCATCCTGTACATCAGAAATTTCAGACAATTCCTTGAGATCTCATTGGATTAGAATTGGAAGCTACCAAGAAGAAGACTTCAATACTCTCAACAAGAGCATAACTAAGGGATTGGCAGCCAGTGGATCTTGTAATGCTTTTCTTCTAGGAGGTAATTATCCTCTTTTATTGGCCCATACAGGCGAGGGACATTCAGTGGATTTCACTGTGCCTGAGGATTGGGACATGAAGGGAATGGCTTTGTGTTTTGTGTATTTATCAACACCTGAAACCGTAGCAACTAAGTGCCTTATTAGTGTCGTACTGGTTAATTACACAAAGTGCAGCATCCAGATATACAAGCGAGACACGGTCATTTCCTTTAATGATGCAGATTGGCAGGGCATAATATCTCATTTGGAAGCTGGAGACAAGGTGGAGATTTTTCTGTCTTTTAGGAATGAATTGGTGATAAAAAACACAGCTGTCTATCTTCTAAAAAAACCTGTTATGAAGGTTTATAGCAGGAAGAGGAATCTTAAGGATCAAGAAAGCAGCCGGAAGAGACAAGGGTAA 3102 0.3959 MAFDSSSPSSKSERIYDVFINFRGVDTRKKFVSHLHSSLSKAGVKTFLDEENLLKGMELKELLRAIEVSQIAIVVFSKRYADSSWCLEELQKIFECRQTCGLRVVPVFYYVEPSEVRQQKGDFGDALRAAARSGYAGEHLEFALSSWRRTLTDAANLSGWNPKDWRTEAELVRDIVNYVIANLDYNALPITKFPVGLDHPVQEVIRFIERTRNSCKIGIWGMGGSGKTTIAKTIYNKLHRLFENKSFIENIREVCQTDRRRGLVRLQEKLLSDILKVKVEIQSNGIGQGMIENRFIGKRAVIVLDDVNKFDQLQALCGNTQWMGERSVIIITTRDLRLLKSFEVDFVYEMKEMEANESLELFCRHAFREEKPREDFKELAKDAVAYCGGLPLALEVLGSYLSKRTMIEWRSVLSKLKISPNTQVQEKLRISFDSLCDQMEKEIFLDVCCVFIGKDRGCVTEVLNGCGLFADIGITVLLERSLIKVEKNNKLRMHHLLQDMGREIIREGSNKEPGKRSRLWFQEEVRDVLTNSTGTDAIEGLTLKLNLTNRECFKADAFEEMSSLRLLQLHHVELTGDYGYLSKQLRWIYWQGFPSKYIPDNFYLEDAIAINFKHSNLRQLWKEPKVLFMLKFLNLSHSKYLTETPNFSGLPYLEKLILKYCPSLRCVHKSIGDLCKIVLINLKDCTSLSSLPREIYKLKSLKTLILSGCSKIDTLEEDIVEMKSLTTLIAENAVAKQVPFSIVSSKSIGYLFPCGYEGLSHDVLPSIIRSWMSLTMNPLSCIHPLCGISASLVSMNMQNIDLGDLAPILTNLLNLRSVWVQCDTEFQITKQVRKILNDVQGVHFTDLEIASCTSEISDNSLRSHWIRIGSYQEEDFNTLNKSITKGLAASGSCNAFLLGGNYPLLLAHTGEGHSVDFTVPEDWDMKGMALCFVYLSTPETVATKCLISVVLVNYTKCSIQIYKRDTVISFNDADWQGIISHLEAGDKVEIFLSFRNELVIKNTAVYLLKKPVMKVYSRKRNLKDQESSRKRQG 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00548 1033 ProSiteProfiles TIR domain profile. 14 183 IPR000157 GO:0007165
Viun10g00548 1033 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 185 - -
Viun10g00548 1033 PRINTS Disease resistance protein signature 696 712 - -
Viun10g00548 1033 PRINTS Disease resistance protein signature 387 401 - -
Viun10g00548 1033 PRINTS Disease resistance protein signature 294 308 - -
Viun10g00548 1033 PRINTS Disease resistance protein signature 216 231 - -
Viun10g00548 1033 Gene3D - 183 347 IPR027417 -
Viun10g00548 1033 Pfam TIR domain 16 179 IPR000157 GO:0007165
Viun10g00548 1033 Gene3D - 353 436 IPR042197 -
Viun10g00548 1033 SMART till_3 15 157 IPR000157 GO:0007165
Viun10g00548 1033 SUPERFAMILY L domain-like 492 821 - -
Viun10g00548 1033 FunFam Disease resistance protein (TIR-NBS-LRR class) 354 436 - -
Viun10g00548 1033 Gene3D Ribonuclease Inhibitor 529 747 IPR032675 -
Viun10g00548 1033 Gene3D - 9 182 IPR035897 -
Viun10g00548 1033 Pfam NB-ARC domain 200 431 IPR002182 GO:0043531
Viun10g00548 1033 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 160 IPR035897 -
Viun10g00548 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 446 IPR027417 -
Viun10g00548 1033 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 795 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00548 Viun-Chr10 5001182 5007346 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00548 8 742 WRKY Transcription Factor Family AT4G12020 30.132 5.69e-79 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00548 - - gmx:100815297 1299.26