Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00545 ATGGACTTCACATCTTCACCGTCGTTCTCGAAATCGAAACACGAACGGATTCACGACGTGTTCATCAACTTCAGGGGAGAAGACACTCGCAAGAAGTTCGTTTCTCATCTCCACTATGCCCTCTCAAACGCTGGAATCAACACCTTCCTTGACAACGAGAGTCTTTTCAAAGGAATGCAGCCTCATCATGAACGCATGCGAGCAGTAGAAGGATCTCAGATAGCGATTGTAGTTTTCTCCCAAACCTACACTGAATCCGCTTGGTGTCTTCATGAGCTTGAACAAATCATCAAATGCAACGAAACTCAGGGCCAAAGTATTCTCCCTGTGTTTTACAAGATTGACCCTTCCGATGTACGTTATCAGAGTGGTCATTTTGGAAAATTGTTGGAAGAAACTGCACGACGGAGAACTTATTCAGGAGAACACCTGGAGCATACCTTGTCCAGGTGGAGGTGTGCACTCAACAAAGCTGCAAGTTTCTATGGTTGGGATGTCAGCAGTTTCAGGAATGAAGCTGAACTAGTGAGGCAAATTGTTGACCACGTTCAGAAATTACTGAGCTACGAAGTCTTGTCTATTACAGAACATCCTGTTGGACTAGAATCCCGTACGCAAGAAGTGATTGGGCTCATTGAAACTCGTTCCTCCCAAGTCTGCATGATAGGGATTTGGGGTATGGGGGGATCGGGGAAAACTACCGTTGCCAAAGCTATCTACAATCATATTCACCGTGCATTCATGAATAAAAGTTTCATTGAGAATATAAGACAAACTTGTGAAAATCATGGTAGAGGGTATCTTCCTTTGCAAGAACAGCTTCTTTCAAATGTCCTGAGAAAGAAGATGGACATACATAGCGTTGGGATGGGGATAACTTTGATCGAGAACATACTTGCTGGAAAAAGGGCACTCATTGTACTTGATGATGTGAACGAGTACAACCAATTACAAGCTGTGTGTGGAAATCGTAAATGGATTGGTCAAGGAAGTGTAATAATCGTTACTACTAGAGATGTTAGCCTTCTTTATAGACTTGAAGTTGATTATGTTTATGAGATGGATAAAATGGATGAAGACGAGTCCCTTCAGCTTTTCAGTTTTCATTGTTTTCGAGATGCAAAACCAAAAGAAGACTTCAGTGAACTTTCAAGAAACGTCGTTGCTTATTGTGGAGGACTACCTCTGGCTCTTGAAGTGCTTGGTTCTTATTTATTTGACAAGACGTCAAAGAGAGAGTGGGAAGGTGTGTTGTCGATGCTAGAAAAAATTCCCAATGATGAGATTCAGCGGAAATTACGAATAAGCTTTGATAATTTAAGCAATGACATGGAGAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGACATTGGTTATGTCACGGACATACTAAATGGTTGTGACCTATGTGCTGATGTTGGAATACCGGTTCTCATAGAACGTGGCCTCATCAAAGTAAGAAAGAACAACAAACTTGAAATGGATTCTTTACTACAAGAAATGGGAAGAGAGATAATTCGTGAAGACTCAAGAAAGGAGCCTGGGAAGCAAAGTCGATTGTGGTTTCAAAAGGATGTAGTTGAAGTATTGACAAAGAATACTGGGACAGAAGCTATTGAGGGATTGGCTCTGAAAATGCATTTGACTAGCGGAGATTTCTTCAAAGCCGATTCTTTTCAGAAAATGGAGAGATTGAGACTCTTGCAACTCCATCATGTACAACTTGCTGGAAATTATGGGTACCTTTCTAAGCAACTGAGATGGATATCTTGGCAAGGCTTTCCTTCAAAATTTCTGCCAAACAACTTTTATATGGATCATGTAATTGCGATTGATTTAAAACACAGTCATCTTCGATTCCTCTGGAAACAATCCCCGGTTTTGAAGTGGCTAAAAGTCCTTAATCTCAGTCACTCCAGATTCTTGATAGAAACCCCTGATTTTTCGAGACTACCAAGTCTTGAGCAGCTCATTCTCAAAGATTGTCCAAGTTTATTAGCGATACACAAATCCATTGGTGATCTGCGTAATATTTTATTGATAAATTTGAGGGATTGTACAAGCCTAACCAATCTCCCCAAAGAGATATATGAGTTGAAATCTGTGAAAGTATTGATCCTTTCTGGTTGTTCAAAGATTGACAAATTGGGAGAAGATATGGCACAGATGGAATCCTTGGTAACTCTAATTGCTGATGATATTTATGTGAAACAGGTCCCCTTTTCAATAGTAAGCTCGAAAAGTATTAGATATATATCCTTAAGCGGATTTGAAGGACTGGCACGAAATGCTTTTCCTGTTATCATCCGGTCTTGGATGTCACCAACAATGAATCCCCTCTTATATACTCATCCGTTTTATGTCACATCATGTTATCTGGTTTCCATGATTACACAGAATAATACTTTTGGTGAACTTGCACCAATGCTTACAAGCCTTCCAAATCTTCGAAGTGTGTTGGTGCAATGTGAGACAGAGTCTCAATTATCTAAACATGTAAAAACAATTCTGGTTGAAGATGCTCTAAGTTTTAGAGAATCAGGAATTTCAAGGCATCACTTGAGGTCTTCTTTGATTGGAGTTGGAAGTTACAAAGCATTCTTCGATATTCTCAGCAATAGGATATCTGAGGGATTGGCAAGCAATGAGGCATGTGAAGTTGTACTTCCAGGTGACAATTATCCTTATTGGTCGGCCCATACAGGTGATGGACATTCGGTGTATTTCACTGTGCCTGAAGACCGTGGCATGAAGGGAATGGCTTTGTGTATTGTTTATTTCTCAAACCCCGAAATGAAGCCGACCGAATGTTTCACTAGTGTCTTAATTGCTAATTACACAAAGCGCACCCTGCAGATACACAAGCAAGACACTGTGATTTCCTTTAATGATGAAGATTGGAAGGAGATAATATCACATTTGGGAGGTGGAGACAAGGTGGAGATTTTTGTGACTTTTGGTGATGACTTGGTGGTCAAGAAAACTGCTGTCTATCTGATTTATAGTGAATCAAATGATATAGAAATTGAGCCGACTCACGGTGAATCGAATGATATAGAAATTGAGCCCATGGATTGTGAAGCAAATGATATCAAAATTGAGTCTATGAATTCTGAATCAAATCTCTTGGAAATGTATGGTGAATCAAATGATATGGATATGACAGAAACCGGAATCCAAGGCGACGTGTTCATCCATTTTTCGGGAGACGAGATCCGTCGGAATTTTGTTTCTCATCTCAATTCTGCCCTTTTACAGGCTGGAGTAGAACCTTGCCTCCTTGCCATGCGAATGAAGTGGGAACATTTTGTGGCATCAATTAAAATGTTTCAGATTGGAATTGTTGTTTTAACAAAAGAATACAGTGAATCTCTTGGGTGTCTTGATGAGCTCGAACGAATCATTGAATGTCACAAAATTCACGGCTTAATGGTTATGCCTGTCTTTTACGAAATTGACCCATCCGATGCACACATTCAGAATGGTGGTTTTGGAGATGCGCTGAAAGCAACTGCACAAGGAATATTTACAAGAGAATATCTAGAAACTGGGTTGTCTACGTTGAGCAGCCCACTCACCGAAGCTGGCAAGTTGCATAAATGGGATGAGACCAAACACAGTGGAAGGAATGATGCTGAGCTAGTGGAGGAAATTGTTAAGTCTGTTCTTGCTAAACTAGACCGCGTCTTGTCTATAACTAAATTTCCTGTTGGACTAGAATCCCACGTGAAAAATGTGATTAGATTGTTTGAAAATCAACCCACCGAATTTTGTATGATAGGGATATGGGGAATAGGAGGATCAGGTAAAACTACCTTAGCCAAAGCCATCTATAATCAAATTCCTTATACATTTGGTGGTAAAAGTTTCATTCAAGATATTAGAGAAGTTTGTGAAACAGATGGCAGAGGCCTTGTTCATTTACAAGAACAACTTCTCTCAGATGTCCTTAAAACAAAATGGAAGATAGAGAGGGGTGAGATGGAAGAAACTATGAATGAGATCAGACATTCTGGAAAAAGGTTGTTCATTGTGCTCGACGATGTGAACGAGATAGACCAATTAAAACAACTATGTGGAAATGGTAAATGGTTTAGTCGAGGGAGTGTAGTAATCATAACAACAAGAAATTTAGACCTGCTTTATCAATTTAATGTTGATTATGTTTATGAGATGGATGAGCTGGACGAAAGTGATTCTGTTGAACTTTTTAGTTGGCATGCTTTTGGAGAAGCAAAACCGAGAGAAGACTTCAATGAACTTGCAAAATCTGCAGTTACTTATTGTGGTGGACTACCACTCGCACTTGAAATCCTTGGTTCTTTTTTAAGAAAGAGGTCAGAGAATGAATGGAAAAGTGTATTGTCAAAACTAGAAATAATTCCCAATACTCAAGTTCAGAACATACTAAGAATAAGCTTTGACGGCTTATGTGTAATGGAAAAGGATATATTTCTCGATGTATGTTGTTTTTTTATTGGTAAAGACAGAGACTATGTTACAGAAATACTAAATGGTTGTGGACTGCATGCTGATATTGGAATAATAGTTCTCATAAAACGTGGTCTTATAAAAATTGAAAAGAACAATAAACTTGGAATGCATCGTTTGCTCCTGGATATGGGACGAGAGATTGTGCGTCAAAGTTCGACAATGCAACCTGGGAAGCGCAGTCGATTGTGGCTTCGCAAGGATGTACTTGATGTATTGAAAAAGAATACTGGGACAGAAGCTATTGTGGGATTGTCTCTGAATTGTCAGCTACCGAACAGTGATTTCTTCGAAGCTTATGCTTTTGAGAAAATGAAGATGTTGAGATTCTTGCAACTGGATCATGTACAAATGACTGGAGATTATGGGTATCTTTCTAAGCAACTGAGATGGATCTACTGGCAAGGATTTCCTTTAGAATCCATACCTAACAACTTTTACTTGAAAGGTGCAATTGTGATGGATTTCCAACGCAGTAACCTTAGACTAGTGTGGAAAGAACCCGAGGTTTTGCCGTTGCTAAAAATCCTCAATCTTAGTCATTCCAAGTACTTGACAGAAACTCCAGACTTTTCAAAATTACCGAATCTTGAGAAGCTCATTCTCAAGCATTGTCCAAGTTTGCGCAAGGTACACCAATCCATTGGAGATCTACACAATCTTCTACTAGTAAATTTGAAAGGTTGTATAAACCTAAGCAATCTCCCAAGTGAGACATATAAGTTGAAATCTTTGAAAACTCTTATCCTATCTGGTTGTCTGAAGATTGGTATCTTTACACAAGATATACTGCACTTGGAATCCTTGATAACTCTAATTTCTGAAGATACTGGTGTGAAACAAGTTCCCATTTCAGTGGTAAGCTCAAAAAGCATTGGATACATACTTCTAGACGAGAAAAAAGGATTATTACTAGCTGATTTTCGTTCAATCATTTGGTCTTGGATGTCCCATACTTTTAATCCCCTGTATCATATTCGTCCATTTCGAGGCATTTCATTATCTCTAATTTCCATGAATACGGAGAATAATGATTTGGGAGATCTAGCACCAATCCTTAGCAGCATTTTAAATCTGCGTACTGTTTTAGTGCAATGTGTCACTGAGTATCAAATATCTCAAGTAAGAACAATTTTGGAGGAAATTCGTGGTGCTACTTGGACTACGTTGAAAATAAGACCTTCTACACCCGAAATTTCGAACCATCCCTTAAGATCATATTTGATTGAATTTGGAGGTTATCAAGAAGAAGTCTTCAATACTCTTCGCAAGAGCATTTATGAGGGATTGGCAGCCAGACAGACGGGTAATGTTTCTCTCCCTAGTGATAATTATCCTCATTGGTTAACTTATATGGATGAGGGACACTCGGTCTATTTCACTATGCCAAAAAATTTTCACACGGATGGAATGATATTATGTGTTGAGCATTCATCAACCTTTGGAGACCCAACTGACTGTCTTGATAGTGTCTTAATTGTTAATTATACAAAGTGCACAATCCAATTATTCAAGCGAGACACAATCACTTCCTTTAATGATGTAGATTGGCAGGGCATGATATCACATCTGGCATATGGAGATAAGGTGGGGATTTTTGTTATTTTTAGGGATGGATTTGAAGTCCGGAAGACAAGTGTCTATCTAGTGTGTGATGGATCAATTGACAGAATGTCAATGTAA 6186 0.3894 MDFTSSPSFSKSKHERIHDVFINFRGEDTRKKFVSHLHYALSNAGINTFLDNESLFKGMQPHHERMRAVEGSQIAIVVFSQTYTESAWCLHELEQIIKCNETQGQSILPVFYKIDPSDVRYQSGHFGKLLEETARRRTYSGEHLEHTLSRWRCALNKAASFYGWDVSSFRNEAELVRQIVDHVQKLLSYEVLSITEHPVGLESRTQEVIGLIETRSSQVCMIGIWGMGGSGKTTVAKAIYNHIHRAFMNKSFIENIRQTCENHGRGYLPLQEQLLSNVLRKKMDIHSVGMGITLIENILAGKRALIVLDDVNEYNQLQAVCGNRKWIGQGSVIIVTTRDVSLLYRLEVDYVYEMDKMDEDESLQLFSFHCFRDAKPKEDFSELSRNVVAYCGGLPLALEVLGSYLFDKTSKREWEGVLSMLEKIPNDEIQRKLRISFDNLSNDMEKDIFLDVCCFFIGKDIGYVTDILNGCDLCADVGIPVLIERGLIKVRKNNKLEMDSLLQEMGREIIREDSRKEPGKQSRLWFQKDVVEVLTKNTGTEAIEGLALKMHLTSGDFFKADSFQKMERLRLLQLHHVQLAGNYGYLSKQLRWISWQGFPSKFLPNNFYMDHVIAIDLKHSHLRFLWKQSPVLKWLKVLNLSHSRFLIETPDFSRLPSLEQLILKDCPSLLAIHKSIGDLRNILLINLRDCTSLTNLPKEIYELKSVKVLILSGCSKIDKLGEDMAQMESLVTLIADDIYVKQVPFSIVSSKSIRYISLSGFEGLARNAFPVIIRSWMSPTMNPLLYTHPFYVTSCYLVSMITQNNTFGELAPMLTSLPNLRSVLVQCETESQLSKHVKTILVEDALSFRESGISRHHLRSSLIGVGSYKAFFDILSNRISEGLASNEACEVVLPGDNYPYWSAHTGDGHSVYFTVPEDRGMKGMALCIVYFSNPEMKPTECFTSVLIANYTKRTLQIHKQDTVISFNDEDWKEIISHLGGGDKVEIFVTFGDDLVVKKTAVYLIYSESNDIEIEPTHGESNDIEIEPMDCEANDIKIESMNSESNLLEMYGESNDMDMTETGIQGDVFIHFSGDEIRRNFVSHLNSALLQAGVEPCLLAMRMKWEHFVASIKMFQIGIVVLTKEYSESLGCLDELERIIECHKIHGLMVMPVFYEIDPSDAHIQNGGFGDALKATAQGIFTREYLETGLSTLSSPLTEAGKLHKWDETKHSGRNDAELVEEIVKSVLAKLDRVLSITKFPVGLESHVKNVIRLFENQPTEFCMIGIWGIGGSGKTTLAKAIYNQIPYTFGGKSFIQDIREVCETDGRGLVHLQEQLLSDVLKTKWKIERGEMEETMNEIRHSGKRLFIVLDDVNEIDQLKQLCGNGKWFSRGSVVIITTRNLDLLYQFNVDYVYEMDELDESDSVELFSWHAFGEAKPREDFNELAKSAVTYCGGLPLALEILGSFLRKRSENEWKSVLSKLEIIPNTQVQNILRISFDGLCVMEKDIFLDVCCFFIGKDRDYVTEILNGCGLHADIGIIVLIKRGLIKIEKNNKLGMHRLLLDMGREIVRQSSTMQPGKRSRLWLRKDVLDVLKKNTGTEAIVGLSLNCQLPNSDFFEAYAFEKMKMLRFLQLDHVQMTGDYGYLSKQLRWIYWQGFPLESIPNNFYLKGAIVMDFQRSNLRLVWKEPEVLPLLKILNLSHSKYLTETPDFSKLPNLEKLILKHCPSLRKVHQSIGDLHNLLLVNLKGCINLSNLPSETYKLKSLKTLILSGCLKIGIFTQDILHLESLITLISEDTGVKQVPISVVSSKSIGYILLDEKKGLLLADFRSIIWSWMSHTFNPLYHIRPFRGISLSLISMNTENNDLGDLAPILSSILNLRTVLVQCVTEYQISQVRTILEEIRGATWTTLKIRPSTPEISNHPLRSYLIEFGGYQEEVFNTLRKSIYEGLAARQTGNVSLPSDNYPHWLTYMDEGHSVYFTMPKNFHTDGMILCVEHSSTFGDPTDCLDSVLIVNYTKCTIQLFKRDTITSFNDVDWQGMISHLAYGDKVGIFVIFRDGFEVRKTSVYLVCDGSIDRMSM 2061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00545 2061 Gene3D Ribonuclease Inhibitor 1586 1786 IPR032675 -
Viun10g00545 2061 Pfam NB-ARC domain 1245 1463 IPR002182 GO:0043531
Viun10g00545 2061 Pfam NB-ARC domain 211 427 IPR002182 GO:0043531
Viun10g00545 2061 SUPERFAMILY L domain-like 549 824 - -
Viun10g00545 2061 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 765 IPR044974 GO:0006952
Viun10g00545 2061 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 164 IPR035897 -
Viun10g00545 2061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 451 IPR027417 -
Viun10g00545 2061 Gene3D Ribonuclease Inhibitor 548 842 IPR032675 -
Viun10g00545 2061 ProSiteProfiles TIR domain profile. 1063 1230 IPR000157 GO:0007165
Viun10g00545 2061 SUPERFAMILY L domain-like 1597 1864 - -
Viun10g00545 2061 Gene3D - 185 350 IPR027417 -
Viun10g00545 2061 Gene3D - 1229 1393 IPR027417 -
Viun10g00545 2061 SMART till_3 17 161 IPR000157 GO:0007165
Viun10g00545 2061 SMART till_3 1064 1195 IPR000157 GO:0007165
Viun10g00545 2061 SUPERFAMILY "Winged helix" DNA-binding domain 427 534 IPR036390 -
Viun10g00545 2061 SUPERFAMILY Toll/Interleukin receptor TIR domain 1062 1175 IPR035897 -
Viun10g00545 2061 ProSiteProfiles TIR domain profile. 16 187 IPR000157 GO:0007165
Viun10g00545 2061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1236 1491 IPR027417 -
Viun10g00545 2061 Gene3D - 1398 1482 IPR042197 -
Viun10g00545 2061 Gene3D - 356 441 IPR042197 -
Viun10g00545 2061 Pfam TIR domain 1066 1230 IPR000157 GO:0007165
Viun10g00545 2061 Pfam TIR domain 18 185 IPR000157 GO:0007165
Viun10g00545 2061 SUPERFAMILY "Winged helix" DNA-binding domain 1469 1575 IPR036390 -
Viun10g00545 2061 Gene3D - 10 184 IPR035897 -
Viun10g00545 2061 Gene3D - 1060 1228 IPR035897 -
Viun10g00545 2061 PRINTS Disease resistance protein signature 221 236 - -
Viun10g00545 2061 PRINTS Disease resistance protein signature 298 312 - -
Viun10g00545 2061 PRINTS Disease resistance protein signature 701 717 - -
Viun10g00545 2061 PRINTS Disease resistance protein signature 391 405 - -
Viun10g00545 2061 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00545 Viun-Chr10 4978495 4991783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00545 7 770 WRKY Transcription Factor Family AT4G12020 29.104 1.06e-78 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00545 - - vun:114167037 4136.26