Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00543 ATGGAATTCGCCTCTTCAACTTCCAAACTTCCACAGATGTATGACGTGCTGATTAACTTCAATGGAGAAGACATCCACAGGAAATTTGTTTCTCATCTCAATTCTGTCCTCTCTGCTGCTGGACTCACCACTTTCCTTCACCACCAGAATGCAGTCAACGACATGGACATCCAACAGCCTATTCTCAATCTCTGTCGTGTAGCAATTGTTGTGTTCACCAAAACCTATTCTAAGTCTGATTGGTGTCTGGATCAACTTCAACATATCATCAAATGGCACGAAACTTATTCACGATATGTTCTCCCCGTATATTACGAAATCCAGCCATCTGATGTACGCCTTCAGAAGGGTGACTTTGGAAAAGCCTTCAAAGAAACTGCACAACAAACATTTTCAGCACAACAACTGGAGCATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGCTGCAAATTTATTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGACCTAGTGGATACAATTGTTAAGAGCATTCTTACGTTACCAGTCTTGTCTGCCACTAAATTTCCAGTTGGATTACAATCCCACGTGGAAGATGCGATTCAAATTATAAAAAATAAATCCTCGGAAGTTTGTAGGATAGGGATATGTGGAATGGGAGGATCGGGTAAAACAACCCTTGCCAAAGCCATCTATAATCAAATTCAGGGTACATTCATGGAAAAAAGTTTCATTGAAGATATTGCACAAGTTAGACAAACAAGAGGGCTTCTTCATTTACAAGAACAACTTCTTTCGGATGTCCTAAAAACAAAGGTGGAGATACATAGCGATGAGATGGGAAGAAGTATGATTCGGGAAAGACTTTACCGGAAAAGGCTGCTCATTGTACTTGACGATGTGAATGATTATGGTCCATTAGAGCTATGGGGACGGGGAAGTAGTTCTTGGTTAGCTGAAGGAACTGTAATAATCATTACTTTAAGAGATGAAGACCTACTGAAAATGCAACAAGTTTATTCTATTGTTCGGATAAATGTAATGAACCCAAATGAGTCCCTTGAGCTTCTTAGTTGGCATGCATTTAGAGAAGCAAAACCAAAAATGGAATACCATTTCCTTGCAAAACGAGTAGTTGATTATTGTGGAGGACTACCTCTAGCTCTTGAAGTCATCGGAAGTTATTTATATGAAAGGACGAAAGAAGAATGGAACAGAGTATTGTTAAGATTAGACAATATTCCCCAGAATGAATTTCTAGATATATTGAAAATAAGCTTCGATGGTTTACATAATCAAAGGGAAAAGGATTTATTCCTTGATATTTGTTGTTTCTTTGTTGGTACTAGCAGAGCCTATGTCTCCAAGATCCTAAATGCCTGTGGAGTAGACCCTGATCGTGGGATAAGAGTTCTCATAAAGCGCAACCTCGTAAAAGTTAGAAAGAACAACAAATTTGGAATGCATCCTTTGGTACGAGATATGGGAATTCGTGAAATTTCAAGAAAGCAATTTGTGACGAACAAACGGCTGTGGTTTGATGAGGATATGAATTATGCACTGTCAGAGAATACACTCTTCTCATCACAGGGGGCAAAAGTCATCCAGAGATTGCCTACCGGAAGAGATTTGTTTGAACGTCATCCTTCTTATCCTTTAAAGGTAAGAGACCTGCTGCAACTCGCTGGAAATTCTGGGAACCTGAAATGGATCAGTTTGCAAGGATTTTCTTCAGAATACCTACCTAATGACTTTTATTTGCATGATACAATTGTGATTGAGTTAAAACACAGTCTTCTTCGATTCGTCTGGAAAGAACCCCAGGTTTTGGCGTCGCTAAAAGTCCTTAATCTTAGTTACTCCATGTACTTATCAAAAACCCCTGCCTTTTGGGGGTTACCAGGTCTTGAACAGCTCATTCTCAAAGATTGCCCAAATTTGTGTCATGTACACCGATCTATTGGTTTTCTTTGCAGTCTTAGACTGCTAAATTTGAAGGGTTGTACAAGTCTAAGCAATCTCCCGAGAGAGATATATAAGTCGAAATCTTTAAACTCTCTCATTCTCTCTGGTTGTTCTAAAATTTTCCTATTGGAAAAAGATATAGTGCAAATGAAATCCTTGATAACTCTAATTGCTGAAAATACAGCGGTGAAACAAGTGCCTTTTTCAATTACAAGCTCAAAAAGCATTGGATATATATCCTTACCTCAATTAGAGGGACGGTCACGTAATCTTTTTCCTTCTATCATTCGGTCTCGATTGTCAACAACAATGAATCCCCAATCTTATATTCATTCGTTCATGGATATGGAGGATAATAGTTGGGATTATGTTGCACCATTTCTTAGCAGCCTTGCAAATCTTCGAAGTGTTTTTGTGCAGTGTGACCCCGAGTTTGAAATATCTAAGCAACTAAAACCTATACTGGTTGAATATGGTATGAATATTACAGAATCAAGAATTCCAAAGCATAATATCAGGTCTTCTTTGATTGGTGTTGGAAGATATCAAGAATTCTTCAATACTGTCAGCGATAGCATATCTAAGGCATTGGCAAAGAGTGAGTCATGTGATGTTTCTCTCCCAAGTGTCAATGATCCTAATTGGTTGGCCCAAATGGGTGATGGACAATCTGTTTCTTTCACAGTGCCTCGGGATCGTGTCGTGAAGGAAATGGTTTTGTGTGTTTTTTATTTATCAACCTCCAAAATCATTGAACCTGAACTTACTACTGTCTTAATTGTTAATTACACCAAGTGTACATTAGTGATACACAACCATGGCACAGTAATTTCCTTTAGTGATGAAGATTGGCATGACATAATGTCAAATTTTGGATCAGGAGACAAGGTGGAGATTTTTGTGAGTTTTGGTCACGGATTGCTGGTTAAGAACACTGTTGTGTATCTGATGTATGGTGAGCCAAATAAAAATTCCCTCATTGGATTCATAAAGAAAATTGTAATGTGA 2964 0.3873 MEFASSTSKLPQMYDVLINFNGEDIHRKFVSHLNSVLSAAGLTTFLHHQNAVNDMDIQQPILNLCRVAIVVFTKTYSKSDWCLDQLQHIIKWHETYSRYVLPVYYEIQPSDVRLQKGDFGKAFKETAQQTFSAQQLEHGMSRWSHALTKAANLFGWDESNYRSDADLVDTIVKSILTLPVLSATKFPVGLQSHVEDAIQIIKNKSSEVCRIGICGMGGSGKTTLAKAIYNQIQGTFMEKSFIEDIAQVRQTRGLLHLQEQLLSDVLKTKVEIHSDEMGRSMIRERLYRKRLLIVLDDVNDYGPLELWGRGSSSWLAEGTVIIITLRDEDLLKMQQVYSIVRINVMNPNESLELLSWHAFREAKPKMEYHFLAKRVVDYCGGLPLALEVIGSYLYERTKEEWNRVLLRLDNIPQNEFLDILKISFDGLHNQREKDLFLDICCFFVGTSRAYVSKILNACGVDPDRGIRVLIKRNLVKVRKNNKFGMHPLVRDMGIREISRKQFVTNKRLWFDEDMNYALSENTLFSSQGAKVIQRLPTGRDLFERHPSYPLKVRDLLQLAGNSGNLKWISLQGFSSEYLPNDFYLHDTIVIELKHSLLRFVWKEPQVLASLKVLNLSYSMYLSKTPAFWGLPGLEQLILKDCPNLCHVHRSIGFLCSLRLLNLKGCTSLSNLPREIYKSKSLNSLILSGCSKIFLLEKDIVQMKSLITLIAENTAVKQVPFSITSSKSIGYISLPQLEGRSRNLFPSIIRSRLSTTMNPQSYIHSFMDMEDNSWDYVAPFLSSLANLRSVFVQCDPEFEISKQLKPILVEYGMNITESRIPKHNIRSSLIGVGRYQEFFNTVSDSISKALAKSESCDVSLPSVNDPNWLAQMGDGQSVSFTVPRDRVVKEMVLCVFYLSTSKIIEPELTTVLIVNYTKCTLVIHNHGTVISFSDEDWHDIMSNFGSGDKVEIFVSFGHGLLVKNTVVYLMYGEPNKNSLIGFIKKIVM 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00543 987 SMART till_3 13 153 IPR000157 GO:0007165
Viun10g00543 987 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Viun10g00543 987 Gene3D - 345 428 IPR042197 -
Viun10g00543 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 439 IPR027417 -
Viun10g00543 987 Gene3D - 175 341 IPR027417 -
Viun10g00543 987 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 706 IPR044974 GO:0006952
Viun10g00543 987 SUPERFAMILY L domain-like 559 789 - -
Viun10g00543 987 PRINTS Disease resistance protein signature 379 393 - -
Viun10g00543 987 PRINTS Disease resistance protein signature 285 299 - -
Viun10g00543 987 PRINTS Disease resistance protein signature 605 621 - -
Viun10g00543 987 PRINTS Disease resistance protein signature 210 225 - -
Viun10g00543 987 Pfam TIR domain 14 175 IPR000157 GO:0007165
Viun10g00543 987 Gene3D - 7 174 IPR035897 -
Viun10g00543 987 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Viun10g00543 987 Pfam NB-ARC domain 192 410 IPR002182 GO:0043531
Viun10g00543 987 SUPERFAMILY "Winged helix" DNA-binding domain 415 517 IPR036390 -
Viun10g00543 987 Gene3D Ribonuclease Inhibitor 548 813 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00543 Viun-Chr10 4782582 4788120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00543 14 722 WRKY Transcription Factor Family AT4G12020 26.351 9.95e-55 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00543 - - vun:114165123 1255.74