Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00540 ATGGCACGAAACTTATTGTCGACATGTTCTGCCGTATATTACGAGATTGAGCCATCTGAATGTACGTCCTTCAGAAGGGTGATTTGGAAAGCCTTCAAAGCAACTGCACAACAAACATTTTCAGGACAACAACTGGAGCATGGCATGTCCAGTTGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGGAATTACAGGAGTGATGCTGAACTCGTGGACACAATTGTTAAGAGGATTCTTTATTTACCAGCCCTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCTACGTGGAAGATGTGATTCGCACTATCGAAAATAAATCCACGGAAGTTTGTATGATAGGTATATATGGAATGGATGGATCTGGTAAAACCACCGTGGCGAAAGCCATCTACAATGAAATTCATGATACATTCACGGAGAAAAGTTTTATTGAAGATAATGCACAAGTTAGTCGAACAAGAGGGTATGTTCACTTACAAGAAAAACTTCTTTCAGATGTCCTAAAAACAAAGGTAGAGATACATAGCGATGAGATGGGAAGAAGTATGATTCGGGAGAGGCTTTTTCAGAAAAGGGTGCTCATTGTACTTGACGATCTGAATGAGCATGGTCCATTATTAGACCTATGGGAATCTCGTGCATGGTCAGGCAAAGGAACTGTAATAATCGTTACAACAAGACATGAACACCTACTAAGGGCACGTCAAGTTGATGCTGTTTTTCGGATAAATCCAATGAACGAAAACGAGTCCCTCGAGCTTCTAAGTTGGCACGCATTTAGAGAAGCAAAACCGAAAGAAGAATTCCATGACCTTGCTAAAACAATAGTTACTCGTTGTGGAGGACTACCTCTAGCTCTTGAAGTCATTGGTACTTATTTATGTGAAAGGACGAAAGAAGAATGGCAAAGAGTATTGTTCAAATTAGTGAAAATTCCCCAGCATGAAGTTCTACAGATATTGAAAATATGCTTTGACGGTTTACCTAATCAAATGGAAAAAGATTTATTCCTTGATATTTGTTGTTTCTTTGTTGGTAAAGGCAGAGCTTATTTTACGAAAATCCTAAATGGTTGTGGAATAGACGCTGATACTGCAATAAGAGTTCTCATAGAACGTAGTCTCATAAAAGTAAAAAAGAATAATAAATTTGGAATGCATCCTTTGCTACGAGATATGGGAAGAGAAATTATTCGTGAAATTTCAAGAAACGAACCTGAAAATAGTCGGCTGTGGCTTGATGAGGATATGAAACATGCGCCGTCAAAGAATACTGTAAGAGACACATCAAGAATGCTGAAACTCGCTGGACACTCTGAGTACCTCTTTAAGAAACTGAGATGTATCAGTTTGCAAGGGTTTTCTTCAGAATACCTACCAAACGACTTTTATCTGCATGATGCAATAGTGGTTGATTTAAAATACAGTCTTCTTCGACTCGTTTGGAAAGAATCCCAGGTTTTGGTATCGCTAAAAGTCCTTAATCTTAGTCATTCCAAGTACTTGACAAAAACCCCTGACTTTTCAAGACTACCAAGTCTGGAACAACTCATTCTCAAAGATTGCCCAAGTTTGCGCGAAGTGCACCGATCTATTGGATGTCTCTACAATCTTACACTGCTAAATTTGAAGGACTGTACAGGTCTAAGAAATCTCCCCAGAGAGATATATATGTTGAAATCTTTAAAAACTCTCATTGTTTCTGGTTGTTCGAAGATTGACCTATTGGAGAAAGATATAGTGCAAATGCAATGCTTGATAACTCTAATTGCTGAAAATACAGTTGTGAAACAAGTGCCTTTTTCACTTGTAAGCTCAAAAACTACTGCATATATATCCCTACGAGGATGTGAGGGATTATCACATAATCTTTTTCTTTTTATCATTCGGTCTTGGATATCGCCATCAATGCATCCCCTATCTTATATTCGTTCGTTTTGCATGGATATGGAGGTTAATAGTTGGGATGATATTGCACCATTGCTTAGTAGCCTTGCAAATCTTCGAAGCGTTTTGGTACAATGTGACACCGAGTTTCAACTATCTAAGCAAGTAGAAATTATTGTGGTCGAATATCGTGTAAATATTACAGAATCAGACACTTCAAAGCCGCACTTTAGGTCTTCTTTGATTGGTGTAGGAAGATGCAAAGAGTTCTTCGATGCTTTCAGTGATAGCATTTCTCAGGTATTAGCACGCAGTGAGTCATGTGATGTTTCTCTCCCGGTGGGCAATGGTCCTTATTGGTTGGCTCATATGGGTGAGGGACATTCTGTTTCTTTCACTGTGCCTCAAGATCGTGTCATAAATGGAATGGCCTTGTGTTTCGTTTACTTATCAACCTTTGAAATTGTGGCAACTGAATGCCTTAGAAGTGTCTTAATTGTTAATCACACAAAATGCACATTGCAGATACACAACCATGGAACGGTAATTTCCTTTAATGATATAGATTGGCAAGGTATAATATCAAATTTAGAATCAGGAGACAAGGTGGAAATTTTTTTGACTTTTTCCCAAGAATTGGTAGTCAAGAACACAGTTGTGTATCTGATATGTGGTGAATCAAATGACTTAGAAACGAAGTCTTTGCCAAAGAAAAACTCCCTCATTAGATTTCTAAAGAATATTGTATAA 2658 0.383 MARNLLSTCSAVYYEIEPSECTSFRRVIWKAFKATAQQTFSGQQLEHGMSSWSHALTKAANFFGWDERNYRSDAELVDTIVKRILYLPALSATKFPVGLQSYVEDVIRTIENKSTEVCMIGIYGMDGSGKTTVAKAIYNEIHDTFTEKSFIEDNAQVSRTRGYVHLQEKLLSDVLKTKVEIHSDEMGRSMIRERLFQKRVLIVLDDLNEHGPLLDLWESRAWSGKGTVIIVTTRHEHLLRARQVDAVFRINPMNENESLELLSWHAFREAKPKEEFHDLAKTIVTRCGGLPLALEVIGTYLCERTKEEWQRVLFKLVKIPQHEVLQILKICFDGLPNQMEKDLFLDICCFFVGKGRAYFTKILNGCGIDADTAIRVLIERSLIKVKKNNKFGMHPLLRDMGREIIREISRNEPENSRLWLDEDMKHAPSKNTVRDTSRMLKLAGHSEYLFKKLRCISLQGFSSEYLPNDFYLHDAIVVDLKYSLLRLVWKESQVLVSLKVLNLSHSKYLTKTPDFSRLPSLEQLILKDCPSLREVHRSIGCLYNLTLLNLKDCTGLRNLPREIYMLKSLKTLIVSGCSKIDLLEKDIVQMQCLITLIAENTVVKQVPFSLVSSKTTAYISLRGCEGLSHNLFLFIIRSWISPSMHPLSYIRSFCMDMEVNSWDDIAPLLSSLANLRSVLVQCDTEFQLSKQVEIIVVEYRVNITESDTSKPHFRSSLIGVGRCKEFFDAFSDSISQVLARSESCDVSLPVGNGPYWLAHMGEGHSVSFTVPQDRVINGMALCFVYLSTFEIVATECLRSVLIVNHTKCTLQIHNHGTVISFNDIDWQGIISNLESGDKVEIFLTFSQELVVKNTVVYLICGESNDLETKSLPKKNSLIRFLKNIV 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00540 885 Gene3D - 3 86 IPR035897 -
Viun10g00540 885 Gene3D - 87 247 IPR027417 -
Viun10g00540 885 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 607 IPR044974 GO:0006952
Viun10g00540 885 Gene3D Ribonuclease Inhibitor 440 590 IPR032675 -
Viun10g00540 885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 347 IPR027417 -
Viun10g00540 885 PRINTS Disease resistance protein signature 287 301 - -
Viun10g00540 885 PRINTS Disease resistance protein signature 194 208 - -
Viun10g00540 885 PRINTS Disease resistance protein signature 119 134 - -
Viun10g00540 885 PRINTS Disease resistance protein signature 493 509 - -
Viun10g00540 885 Gene3D - 253 336 IPR042197 -
Viun10g00540 885 Pfam NB-ARC domain 102 317 IPR002182 GO:0043531
Viun10g00540 885 SUPERFAMILY L domain-like 393 677 - -
Viun10g00540 885 SMART AAA_5 116 251 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00540 Viun-Chr10 4767888 4774715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00540 455 675 WRKY Transcription Factor Family AT5G45050 26.457 5.80e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00540 - - vun:114165123 1308.51