Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00538 ATGACGTCATCAATTCCTTCCATGGAACTCCCCTCTTCATCTTCCAAACTCCCACCGATGTACGACGTGCTCATCAACTTCACTGGAGAAGACATCCGCAGGAAATTTGTTTCTCATCTCGATTCTGCCCTCTCTGCTAATGGGCTCACCACTTTCCTTCACCACGACAATGCAATAAAGCCGGTGCACATCCAACAACCTATTCTCAATCTGTGTCGGGTAGCAATTGTTGTTTTCACCGAAACCTATTCCCAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATTCAATGGCACGAAACTTATTGCCGACATGTTCTGCCCGTATATTACGAAATTCAGCCATCCGATGTACGTCTTCAGAAGGGTGATTTTGGAAAAGCCTTCAAAGCAACTGCACACCAAACATTTTCAGCACAAGAACTGGAGCATGCCATGTCTAGGTGGAGTCACGCAATCACCAAAACTGCAAATTTCTTTGGATGGGATGATTGCAACTACAGGAGTGATGCTGAACTAGTGGACACAATTGTTAAGAGTGTTCTTAATTTATCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAGTCTCGCGTGGAAGATGTGATTGAAATTATAAAAAATAAATCAACGGAAGTTTGTAGGATAGGGATATGTGGAATGGGAGGATCAGGTAAAACCACCCTTGCCAAAGCCATTTATAGTCAAATTCATGGTACATTCGTGGAGAAAAGTTTTGTTGAAGATATTTCAGAAGTTAGTCGGACGAGAGGGCATGTTCATTTACAACGACAACTTCTTTCAGATGTCCTGAAAACAAAGGTAAAGATACATAACGTTGAAATGGGAAGATGTATGATTCTGGAAAAACTTTATCGGAGAAGGGTGCTCATTGTACTTGACGATGTGAATGAACATTGTCCATTAGACATATGGGAAAGTAAGGGATGGTTCAGTGAAGGAACTGTAATAATCATTACAACAAGAGATGAATACCTACTAAGGAAACATGAAGTTCGTTCTGTTTTTCGGATAAATCGAATGAATGAAAACCAGTCCCTTGAACTTTTTAGTTGGCACGCATTTAGGGAAGCAAAACCAAAAGAGGAATACTATTCTCTTGCAAAAAGACTTGTTGCTTATTGTGGAGGACTACCTCTAGCTCTTGAAGTCGTTGGAACTTATTTATATGAAAGGACGAAAGAAGAATGGAATAGAGTATTGTTGAAATTAGACAATGTTCCTCGACATGAAATTCTACAGATATTGAAAATAAGCTTTGACGGTTTGCCTAATCAAATGGAAAGAGATCTATTCCTTGATATATGTTGTTTCTTTGTTGGTAAAGGCAAAGTTTATGCTACCAAGATCCTAAATGGCTGTGGAGTAGACGCTGATAGTGGAATAAGAGTTCTCATAGAGCGTAACCTCATAAAAGTTAAAAATAACAACAAATTTGGAATGCATCCTCTGCTCCGGGATATGGGAAGAGAAATTATTCTTGAAATTTCAAGTAAGGAACCTTGGAATAAGAATCGGGTGTGCCTTGAAAACGATATGCATCATGCACTGTCAGAGAATATTCTCTTTTCATCACAGGAGACAAAGGTCGTTCACAGATCGCCTACAGGGAGAGATTCATATGAACGTTATCCTTTAGAGGTAAGTGACCCATCAAGATTGGTGAAGATCAATGCAGATTCTAAGTACCGTACTAAGAAATTAATATGGATCAGTTGGCAAGGGTTTCCATCAGAATACCTACCTAACGACTTTTATCTGCATGATGCCATAGCTATTGATTTAAAATACAATCTTCTTCGATTCCTATGGAAACAACCCCAGGTTTTGGAGTCACTAAAAGTCCTCAATCTCAGTCATTCCATGTACTTGACAAAAACACCTGACTTTTCGAGACTACCAAGACTTGAACAGCTCATTCTCAAAGATTGTCCAAGATTGCACAAAGTTGACCAATCTGTTGGATGTCTATGCAATCTTACACTTCTAAATTTGAAGGATTGTACAAGTCTAAGCAATCTCCCAAGAGAGATATATAAGCTGAAATCTTTGAAAGCTCTCATTCTCTCTGGTTGTTCAAAGTTAAGCCTAATGGAAAAAGATATAGGGCAAATGGAATCCTTGATAAGTTTAATTGCTGAAAATGCAGTTGTTAAACAAGTGCCTTTTTCCATTGTAAGCTCAAAATGCATTGGACATATATCCCTACATCGATTTGAGGGATTGTCACATAATCCTTTTCCTTCTATCATTTGGTGTTGGATGTCGCCAACAATGAATCCCCTATCTTATATTCATTCGTTTTGCATGGATAAAGAGCATAGTAGTGGTGATGATATTATGCCACTATTTAACACCCTTGCAAATCTTCGAAGTGTTGTGGTACAATGTGACACCGAGTTTCCACTATCTACACAAGTAAAAACTACTCTGGTTGAATATGTTGTAAATATTTCAGAATCGGGAATTTCAAAGCATCACTTCAGGTTATCTTTGATTGGTTTTGGAAGACACGGTGAATTCTTCAATACTGTGAGCGATGGCATATCTGAGGTATTGGCAAGTAGTGAGTTAAGTGAAGTTTCTCTCCCTGGCGACAATGATCCTTTTTGGTTGGCCCATATGGGTGAGGGACATTATGTTTCTTTCACTTTGCCTCAGGATCGTGTCATGAAGGGAATGGCTTTGTGTGTTGTTTATTTATCAACCTCTGTTCCTGCAGAGAACAAATAA 2760 0.3888 MTSSIPSMELPSSSSKLPPMYDVLINFTGEDIRRKFVSHLDSALSANGLTTFLHHDNAIKPVHIQQPILNLCRVAIVVFTETYSQSAWCLHQLQQIIQWHETYCRHVLPVYYEIQPSDVRLQKGDFGKAFKATAHQTFSAQELEHAMSRWSHAITKTANFFGWDDCNYRSDAELVDTIVKSVLNLSVLSATKFPVGLQSRVEDVIEIIKNKSTEVCRIGICGMGGSGKTTLAKAIYSQIHGTFVEKSFVEDISEVSRTRGHVHLQRQLLSDVLKTKVKIHNVEMGRCMILEKLYRRRVLIVLDDVNEHCPLDIWESKGWFSEGTVIIITTRDEYLLRKHEVRSVFRINRMNENQSLELFSWHAFREAKPKEEYYSLAKRLVAYCGGLPLALEVVGTYLYERTKEEWNRVLLKLDNVPRHEILQILKISFDGLPNQMERDLFLDICCFFVGKGKVYATKILNGCGVDADSGIRVLIERNLIKVKNNNKFGMHPLLRDMGREIILEISSKEPWNKNRVCLENDMHHALSENILFSSQETKVVHRSPTGRDSYERYPLEVSDPSRLVKINADSKYRTKKLIWISWQGFPSEYLPNDFYLHDAIAIDLKYNLLRFLWKQPQVLESLKVLNLSHSMYLTKTPDFSRLPRLEQLILKDCPRLHKVDQSVGCLCNLTLLNLKDCTSLSNLPREIYKLKSLKALILSGCSKLSLMEKDIGQMESLISLIAENAVVKQVPFSIVSSKCIGHISLHRFEGLSHNPFPSIIWCWMSPTMNPLSYIHSFCMDKEHSSGDDIMPLFNTLANLRSVVVQCDTEFPLSTQVKTTLVEYVVNISESGISKHHFRLSLIGFGRHGEFFNTVSDGISEVLASSELSEVSLPGDNDPFWLAHMGEGHYVSFTLPQDRVMKGMALCVVYLSTSVPAENK 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00538 919 Gene3D - 349 433 IPR042197 -
Viun10g00538 919 Gene3D Ribonuclease Inhibitor 574 730 IPR032675 -
Viun10g00538 919 Pfam TIR domain 21 183 IPR000157 GO:0007165
Viun10g00538 919 SUPERFAMILY L domain-like 573 758 - -
Viun10g00538 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 443 IPR027417 -
Viun10g00538 919 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Viun10g00538 919 PRINTS Disease resistance protein signature 292 306 - -
Viun10g00538 919 PRINTS Disease resistance protein signature 384 398 - -
Viun10g00538 919 PRINTS Disease resistance protein signature 217 232 - -
Viun10g00538 919 PRINTS Disease resistance protein signature 688 704 - -
Viun10g00538 919 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Viun10g00538 919 SUPERFAMILY "Winged helix" DNA-binding domain 420 511 IPR036390 -
Viun10g00538 919 Pfam NB-ARC domain 199 419 IPR002182 GO:0043531
Viun10g00538 919 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 731 IPR044974 GO:0006952
Viun10g00538 919 Gene3D - 181 344 IPR027417 -
Viun10g00538 919 Gene3D - 19 180 IPR035897 -
Viun10g00538 919 SMART till_3 20 160 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00538 Viun-Chr10 4742414 4746048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00538 21 705 WRKY Transcription Factor Family AT4G12020 27.528 1.69e-62 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00538 - - vun:114165123 1236.48