Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00536 ATGACGTCATCAATTCCTTCCATGGAATTCGCGTCTTCAACTTCCAAACTCTCACAGATCTATGATGTGCTCATCCACTTCACTGGAGAAGACATCCGCAAGAAATTTGTTTCCCATCTTGATTCTGCCCTTTCTGGTGTTGGATTAACCACTTTCCTTCACCACGACAATGGAGTGAAGCCAATACAGATCCAAGAACCTATTCTCAATCTGTGTCGGGTAGCGATTGTTGTTTTCACCAAAACCTATTCTCAATCTGATTGGTGTCTTGATCAACTTCAACATATCATCAAATGGCACGAAACTTATGCAAGACATGTTCTGCCCGTATATTACGAGATTCAGCCATCTGATGTGCGTCTTCAGAAGGGTGATTTTGGAGAAGCCTTCAAAGAAACTGCACAACAAACATTTTCAGCACAACAACTGGAGCATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGGATACAATTGTTAAGAGCATTCTTACCTTACCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCCACGTGGAAGATGCGATTCAAATTATTAAAAATAAATCCTCGGAAGTTTGTAGGATAGGGATATGTGGAATGGGAGGATCGGGTAAAACAACCCTCGCCAAAGCCATCTATAATCAAATTCAGGGTACATTCATGGAAAAAAGTTTCATTGAGGACATTGCACAAGTTACTCAAACAAGAGGGCGTGTTCATTTACTAGAACAACTTCTGCATGATGTCCTAAAAACGAATGTGGATAGCGTTCAAATGGGAAGAAGTATGATTCGGGAAAGACTTTATGGAAAAAGGGTGCTCATTGTACTAGACGATGTGAATGAGTATTTTTGTTTTTCATATATGAATGAGTATGGTCCATTAGACCTATGGAACAGTCCATGGTTCGGTAAAGGAACTGTAATAATCATTACAACAAGAGATGCAGCGCTACTGACCATGGAACATGTTTACTCTATTATTCGGATAAACGAAATGAATCCAAACGCGTCTCTTAAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAGGAATACCATCTCCTTGCAAAAAGAGTAGTTGATTATTGTGGAGGACTACCTCTAACTCTTGAAGTAATTGGAAGTTATTTATATGAAAGGTCGATAGAAGAATGGACTAAAGTTTTGTCAAGATTAGAAAATATTCCCCAGCATGAAGTTCCACAAATATTGAAAATAGGCTTTGATGGTTTACGTAATCAAATGGAAAAATATTTATTCCTTGATATATGTTGTTTCTTTGTTGGTAAAGACAGAACCTATGTTACCAAGATCCTAAATGGCTGTGGAGTAGACCCTGATAGTGGAATAAGAGTTCTCATAGAGTGTAGTCTCATAAAAGTTACAAAGAACAACAAATTTGGAGTGCATCCCTTGCTACAAGATATGGGAAGAGAAGTTATTCGTGAAATTTCAAGAAAGGAACCCCGGAAGAACATTGAGTTGGTGCTTGATAAGGATACGAAATATGCACTGTTAGAGAATACTCTCTTTTCATCCCAGGGAACAAATGTCATTCAGGGATTGTCTGAGAAACGGTTTTTAACCAGTACAGGTTGCTTCAAACCTTATTCTTTACAAGCAACGAAAATGTTGAAATTCATTGGAGATTCTGAGTACGTTTCTAAGAAACTGAGATGGTTCATCTTGCGGGGGTTTCCTTTAGAATACCTACCTAACGACTTTTATCTGCATGATGCAATAGCCATTGATTTAAAACACAATCTTCTTCGATTCGTCTGGAAGCAACCCCAGGTTTTGACGTGCCTAAAAGTCTTGAATCTTAGTCACTCCCGGTACTTGCAACAAACCCCTGACTTTTCGAGATTACCAAGTCTTGAACAACTCATTCTCAAAGATTGTCCAAGATTGCGTGAAGTACACCATTCTATTGGATGTCTTTGTTATCTTACACTTCTAAATTTGAAGGATTGTACTAGTCTAATCAATCTCACCATAGAGATATATAAGTTGAAATCATTAAAAATTCTCATTCTATCTGGTTGTTCGAAGGTTTCCCTGTTGGAAAAAGATATTGTGCAAATGGAATCCTTGATAACTCTAATTGCCGAAAGTACAGCTGTGAAAGAAGTGCCATTCTCAATTGTAAGCTCAAAAAGCATTGGATATATATCTCTACGAGGATTTCAGGGATTATCACATAATCTTCTTCCTTCTATCATTCGTTCTTGGATGTTGCCAACAATGAAATCCCTATCTTATATTCATTCCTTTTGTATGGATATGGAAGATAATAGCTGGGATGATATTGCGCCATTGCTTAGCACCCTTGTAAATCTTCGAAGTGTTTTGGTGCAATGTAACACCGAGTTTCAACTATCAAAGCAAGTAGAAACTATTCTGAACGAATATTCTCTAAATATTACAAAATCAGGAACTTCAACACATCACTTGAAGTTTTCTTTGATTGGTGTTGGAAGATGCAAAGATATCTTCAATGCTATTAGCGATAGCATTTCTGAGGCATTGGCAAGCAGTAAGTCAAGCGTTGTTTCTCTCCCAGGTGACAATGATCCTGATTGGTTGGCCCATATAGGTGAGGGACCTTTTGTTTCTTTCACTGTGCCTCAAGATTGTGAGGTGAAGGGAATGGCTCTGTGTGTTGTTTATTTATCAACCCCTGGAATCGTGACAACGGAATATCTTACAAGTGTCTTAATTGTTAATTATACAAAGTGCACATTACAGATACATAACCATGGCACGGTAATTTCCTTTAATGATAAAGATTGGGAAGGTATAATATCAAATTTAGGATCAGGAGACAAGGTGGAGATTTTTTATACTTTTAATCTTGAATTGGTTATCAAGAACACAGCTGTCTATCTGATATATGGTGAAACAAATGACTTAGAAAAGGAGTTTGTACCAAAGAAAAAATCCCTCATTAGATTTATGAAGAAAAGTGTAATGTGA 3057 0.3785 MTSSIPSMEFASSTSKLSQIYDVLIHFTGEDIRKKFVSHLDSALSGVGLTTFLHHDNGVKPIQIQEPILNLCRVAIVVFTKTYSQSDWCLDQLQHIIKWHETYARHVLPVYYEIQPSDVRLQKGDFGEAFKETAQQTFSAQQLEHGMSRWSHALTKAANFFGWDESNYRSDAELVDTIVKSILTLPVLSATKFPVGLQSHVEDAIQIIKNKSSEVCRIGICGMGGSGKTTLAKAIYNQIQGTFMEKSFIEDIAQVTQTRGRVHLLEQLLHDVLKTNVDSVQMGRSMIRERLYGKRVLIVLDDVNEYFCFSYMNEYGPLDLWNSPWFGKGTVIIITTRDAALLTMEHVYSIIRINEMNPNASLKLLSWHAFREAKPKEEYHLLAKRVVDYCGGLPLTLEVIGSYLYERSIEEWTKVLSRLENIPQHEVPQILKIGFDGLRNQMEKYLFLDICCFFVGKDRTYVTKILNGCGVDPDSGIRVLIECSLIKVTKNNKFGVHPLLQDMGREVIREISRKEPRKNIELVLDKDTKYALLENTLFSSQGTNVIQGLSEKRFLTSTGCFKPYSLQATKMLKFIGDSEYVSKKLRWFILRGFPLEYLPNDFYLHDAIAIDLKHNLLRFVWKQPQVLTCLKVLNLSHSRYLQQTPDFSRLPSLEQLILKDCPRLREVHHSIGCLCYLTLLNLKDCTSLINLTIEIYKLKSLKILILSGCSKVSLLEKDIVQMESLITLIAESTAVKEVPFSIVSSKSIGYISLRGFQGLSHNLLPSIIRSWMLPTMKSLSYIHSFCMDMEDNSWDDIAPLLSTLVNLRSVLVQCNTEFQLSKQVETILNEYSLNITKSGTSTHHLKFSLIGVGRCKDIFNAISDSISEALASSKSSVVSLPGDNDPDWLAHIGEGPFVSFTVPQDCEVKGMALCVVYLSTPGIVTTEYLTSVLIVNYTKCTLQIHNHGTVISFNDKDWEGIISNLGSGDKVEIFYTFNLELVIKNTAVYLIYGETNDLEKEFVPKKKSLIRFMKKSVM 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00536 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 450 IPR027417 -
Viun10g00536 1018 SUPERFAMILY "Winged helix" DNA-binding domain 426 513 IPR036390 -
Viun10g00536 1018 Pfam TIR domain 21 182 IPR000157 GO:0007165
Viun10g00536 1018 Gene3D - 14 181 IPR035897 -
Viun10g00536 1018 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 739 IPR044974 GO:0006952
Viun10g00536 1018 SUPERFAMILY L domain-like 579 819 - -
Viun10g00536 1018 Gene3D - 182 351 IPR027417 -
Viun10g00536 1018 SMART till_3 20 160 IPR000157 GO:0007165
Viun10g00536 1018 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Viun10g00536 1018 Gene3D Ribonuclease Inhibitor 563 863 IPR032675 -
Viun10g00536 1018 Gene3D - 356 446 IPR042197 -
Viun10g00536 1018 Pfam NB-ARC domain 199 424 IPR002182 GO:0043531
Viun10g00536 1018 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Viun10g00536 1018 PRINTS Disease resistance protein signature 390 404 - -
Viun10g00536 1018 PRINTS Disease resistance protein signature 290 304 - -
Viun10g00536 1018 PRINTS Disease resistance protein signature 696 712 - -
Viun10g00536 1018 PRINTS Disease resistance protein signature 217 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00536 Viun-Chr10 4716753 4720712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00536 18 742 WRKY Transcription Factor Family AT4G12020 27.188 1.08e-60 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00536 - - vun:114165123 1321.22