LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g00535	ATGTCCAGGTGGAGTCACGCAATCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGTAATTACAGGAGTGATGCTGAACTAGTGGATACAATTGTTAAGAGCATTCTTACCTTACCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCCACGTGGAAGATGCGATTCAAATTATTAAAAATAAATCCTCGGAAGTTTGTAGGATAGGGATATGTGGAATGGGAGGATCGGGTAAAACAACCCTCGCCAAAGCCATCTATAATCAAATTCAGGGTACATTCATGGAAAAAAGTTTCATTGAGGACATTGCACAAGTTACTCAAACAAGAGGGCGTGTTCATTTACTAGAACAACTTCTGCATGATGTCCTAAAAACGAATGTGGATAGCGTTCAAATGGGAAGAAGTATGATTCGGGAAAGACTTTATGGAAAAAGGGTGCTCATTGTACTAGACGATGTGAATGAGTATTTTTGTTTTTCATATATGAATGAGTATGGTCCATTAGACCTATGGAACAGTCCATGGTTCGGTAAAGGAACTGTAATAATCATTACAACAAGAGATGCAGCGCTACTGACCATGGAACATGTTTACTCTATTATTCGGATAAACGAAATGAATCCAAACGCGTCTCTTAAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAGGAATACCATCTCCTTGCAAAAAGAGTAGTTGATTATTGTGGAGGACTACCTCTAACTCTTGAAGTAATTGGAAGTTATTTATATGAAAGGTCGATAGAAGAATGGACTAAAGTTTTGTCAAGATTAGAAAATATTCCCCAGCATGAAGTTCCACAAATATTGAAAATAGGCTTTGATGGTTTACGTAATCAAATGGAAAAATATTTATTCCTTGATATATGTTGTTTCTTTGTTGGTAAAGACAGAACCTATGTTACCAAGATCCTAAATGGCTGTGGAGTAGACCCTGATAGTGGAATAAGAGTTCTCATAGAGTGTAGTCTCATAAAAGTTACAAAGAACAACAAATTTGGAGTGCATCCCTTGCTACAAGATATGGGAAGAGAAGTTATTCGTGAAATTTCAAGAAAGGAACCCCGGAAGAACATTGAGTTGGTGCTTGATAAGGATACGAAATATGCACTGTTAGAGAATACTCTCTTTTCATCCCAGGGAACAAATGTCATTCAGGGATTGTCTGAGAAACGGTTTTTAACCAGTACAGGTTGCTTCAAACCTTATTCTTTACAAGCAACGAAAATGTTGAAATTCATTGGAGATTCTGAGTACGTTTCTAAGAAACTGAGATGGTTCATCTTGCGGGGGTTTCCTTTAGAATACCTACCTAACGACTTTTATCTGCATGATGCAATAGCCATTGATTTAAAACACAATCTTCTTCGATTCGTCTGGAAGCAACCCCAGGTTTTGACGTGCCTAAAAGTCTTGAATCTTAGTCACTCCCGGTACTTGCAACAAACCCCTGACTTTTCGAGATTACCAAGTCTTGAACAACTCATTCTCAAAGATTGTCCAAGATTGCGTGAAGTACACCATTCTATTGGATGTCTTTGTTATCTTACACTTCTAAATTTGAAGGATTGTACTAGTCTAATCAATCTCACCATAGAGATATATAAGTTGAAATCATTAAAAATTCTCATTCTATCTGGTTGTTCGAAGGTTTCCCTGTTGGAAAAAGATATTGTGCAAATGGAATCCTTGATAACTCTAATTGCCGAAAGTACAGCTGTGAAAGAAGTGCCATTCTCAATTGTAAGCTCAAAAAGCATTGGATATATATCTCTACGAGGATTTCAGGGATTATCACATAATCTTCTTCCTTCTATCATTCGTTCTTGGATGTTGCCAACAATGAAATCCCTATCTTATATTCATTCCTTTTGTATGGATATGGAAGATAATAGCTGGGATGATATTGCGCCATTGCTTAGCACCCTTGTAAATCTTCGAAGTGTTTTGGTGCAATGTAACACCGAGTTTCAACTATCAAAGCAAGTAGAAACTATTCTGAACGAATATTCTCTAAATATTACAAAATCAGGAACTTCAACACATCACTTGAAGTTTTCTTTGATTGGTGTTGGAAGATGCAAAGATATCTTCAATGCTATTAGCGATAGCATTTCTGAGGCATTGGCAAGCAGTAAGTCAAGCGTTGTTTCTCTCCCAGGTGACAATGATCCTGATTGGTTGGCCCATATAGGTGAGGGACCTTTTGTTTCTTTCACTGTGCCTCAAGATTGTGAGGTGAAGGGAATGGCTCTGTGTGTTGTTTATTTATCAACCCCTGGAATCGTGACAACGGAATATCTTACAAGTGTCTTAATTGTTAATTATACAAAGTGCACATTACAGATACATAACCATGGCACGGTAATTTCCTTTAATGATAAAGATTGGGAAGGTATAATATCAAATTTAGGATCAGGAGACAAGGTGGAGATTTTTTATACTTTTAATCTTGAATTGGTTATCAAGAACACAGCTGTCTATCTGATATATGGTGAAACAAATGACTTAGAAAAGGAGTTTGTACCAAAGAAAAAATCCCTCATTAGATTTATGAAGAAAAGTGTAATGTGA	2619	0.3696	MSRWSHAITKAANFFGWDESNYRSDAELVDTIVKSILTLPVLSATKFPVGLQSHVEDAIQIIKNKSSEVCRIGICGMGGSGKTTLAKAIYNQIQGTFMEKSFIEDIAQVTQTRGRVHLLEQLLHDVLKTNVDSVQMGRSMIRERLYGKRVLIVLDDVNEYFCFSYMNEYGPLDLWNSPWFGKGTVIIITTRDAALLTMEHVYSIIRINEMNPNASLKLLSWHAFREAKPKEEYHLLAKRVVDYCGGLPLTLEVIGSYLYERSIEEWTKVLSRLENIPQHEVPQILKIGFDGLRNQMEKYLFLDICCFFVGKDRTYVTKILNGCGVDPDSGIRVLIECSLIKVTKNNKFGVHPLLQDMGREVIREISRKEPRKNIELVLDKDTKYALLENTLFSSQGTNVIQGLSEKRFLTSTGCFKPYSLQATKMLKFIGDSEYVSKKLRWFILRGFPLEYLPNDFYLHDAIAIDLKHNLLRFVWKQPQVLTCLKVLNLSHSRYLQQTPDFSRLPSLEQLILKDCPRLREVHHSIGCLCYLTLLNLKDCTSLINLTIEIYKLKSLKILILSGCSKVSLLEKDIVQMESLITLIAESTAVKEVPFSIVSSKSIGYISLRGFQGLSHNLLPSIIRSWMLPTMKSLSYIHSFCMDMEDNSWDDIAPLLSTLVNLRSVLVQCNTEFQLSKQVETILNEYSLNITKSGTSTHHLKFSLIGVGRCKDIFNAISDSISEALASSKSSVVSLPGDNDPDWLAHIGEGPFVSFTVPQDCEVKGMALCVVYLSTPGIVTTEYLTSVLIVNYTKCTLQIHNHGTVISFNDKDWEGIISNLGSGDKVEIFYTFNLELVIKNTAVYLIYGETNDLEKEFVPKKKSLIRFMKKSVM	872

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g00535	872	Gene3D	-	32	205	IPR027417	-
	Viun10g00535	872	SUPERFAMILY	L domain-like	433	673	-	-
	Viun10g00535	872	PRINTS	Disease resistance protein signature	144	158	-	-
	Viun10g00535	872	PRINTS	Disease resistance protein signature	71	86	-	-
	Viun10g00535	872	PRINTS	Disease resistance protein signature	244	258	-	-
	Viun10g00535	872	PRINTS	Disease resistance protein signature	550	566	-	-
	Viun10g00535	872	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	33	304	IPR027417	-
	Viun10g00535	872	Gene3D	-	210	300	IPR042197	-
	Viun10g00535	872	Pfam	NB-ARC domain	53	278	IPR002182	GO:0043531
	Viun10g00535	872	Gene3D	Ribonuclease Inhibitor	417	718	IPR032675	-
	Viun10g00535	872	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	3	593	IPR044974	GO:0006952
	Viun10g00535	872	SUPERFAMILY	"Winged helix" DNA-binding domain	280	367	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g00535	Viun-Chr10	4716753	4761873	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun10g00535	49	560	WRKY Transcription Factor Family	AT5G45050	30.055	4.80e-55	205

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g00535	-		-	vun:114165123	1095.11