Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00534 ATGGCGTCTTCAATTCCTCCCACAGAATTCGCCTCTTCAACTTCCAAACTCCCACGGAAGTACGATGTGCTCATCAACTTCACAGGAGAAGACATCCGCAGGAAATTTGTTTCTCATCTCGATTATGCTCTCTCTACTGTTGGGCTCACTACTTTCCTTCATGAGGAGAATGCAGTGAATGACATGCACATCCAACAACCTATTCTCAATCTGTGTCGGGTAGCAATTGTTGTTTTCACCAAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTCCAACAAATCATCAAATGGCAAGAAACTTATTCCCGACATGTTTTTCCTGTATATTACGAAATTCAGCCATCCGATGTACGTCTTCAGAAGGGTGATTTTGGAGAAACATTCAAAGAAACTGCACAACAAACATTTTCAGCACAACAACTAGAGCATGGCATGTCCAGGTGGAGCCACACACTCACCAAAGCAGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTTGTGGACAAAATTGTTGAGGGCGTTCTTAATTTACCAGTCTTGTTTGCTACTAAATTTCCAGTTGGATTACAATCCCGCTTGAACGATGTGATTCAAATTATAAAAGATAAATCCAGGGAAGTTTGTATAATAGGAATATGGGGTGAGGGAGGTTCGGGGAAAACCACCCTTGCCAAAGCTATCTACAATCAACTTCATGGTACATTCACACATAAAAGTTTTATTGAAGATATTTCACAAGTTATTCAAACAAAAGGGCATGTTCATTTACAAGAACAACTACTTTCAGATGTCCTAAACACAAAGATGGAGATACACAGCGTTGAGATGGGAAAAAATAAGATTCGGGAAAAACTTTGTGGGAAAAAATTGCTCATCGTACTTGACGATACCAAATACGATCCATTATTAAACCTACGCGATAGTCATGTATGGTTCGCTAAAGGAACTGTCATAATAATTACAGCAAGAGAAGAACACCTACTAAGGATACCTCAAAATGGTTCTGCTTTTCCAGTAAATCTGTTGAGCACAAATGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAACAAGAATACAATGACCTTGCAAAAAGAGTAGTTGTTTATTGTGGAGGACTACCTCTTGCTCTTGAAGTCATTGGAAGTAGTTTATTTGAAAGGACTAAAGAAGAATGGAAGAGTGTATTGTTAGAATTAAAGGAAATTCCTGAGCATGATGTCCATCGGAAATTGAAAATAAGCTTCAATGGTTTACGCAATGAAATGGAAAAAGATTTATTCCTTGATGTTTGTTGTTTCTTTGTTGGTAAAGGCAGAACCTTTGTTACAAAGATCCTAAATGACTGTGGAGTAGATGCTGATAGTGGACTAAGAATTCTCATTGAGCGTAGCCTCGTACAAGTTAAAAAGAACAAGAAATTAGGAATGCAACAGTTGCTACAAAAAATGGGAAGAAAAATTATTTGTGAAATTTCAAGAAAGGAACTTGGAAAGAACCCTCCACTATGGTCTGGTCAGGATGCAGAATATGAACGATTAGAGAATACTCTCTTCTCATCACAACAGACAAAAGTCATTCAGAAAAGATTGTCTTTGAAAATGTTTTTAATTGCCACAAGAGAGTTCGAACGTTATCCTTCAGGGGTAAGAGACACATCAAGGCTTCTGAGACTCTTCAAAGTTTTTGGGAAACTGAGATGGATCAGTTTGCAAGGGTTTTCTTCAGAATACCTACCTAAAGACATTTATCTGCATGATGCAATGGCGATTGATTTAAAACACAGTCTTCTTCGATTCGTCTGGAAAGAACCTCAGGTTTTGAGTTGGCTAAAAGTCCTTAATCTTAGTCACTCCATGTACTTGAGAGAAACTCCTGACTTTTCTGGACTACCACGTCTTGAACAACTCGTTCTCAAAGATTGTCCAAGCTTGCACAAAGTACACCATTCTATTGGATGTCTCAACAATCTTTTATTGCTAAATTTGAAAGATTGTACAAGTCTAAGCAATCTCCCAAGAGAGCTGTGA 2070 0.3845 MASSIPPTEFASSTSKLPRKYDVLINFTGEDIRRKFVSHLDYALSTVGLTTFLHEENAVNDMHIQQPILNLCRVAIVVFTKTYSQSAWCLHQLQQIIKWQETYSRHVFPVYYEIQPSDVRLQKGDFGETFKETAQQTFSAQQLEHGMSRWSHTLTKAANFFGWDESNYRSDAELVDKIVEGVLNLPVLFATKFPVGLQSRLNDVIQIIKDKSREVCIIGIWGEGGSGKTTLAKAIYNQLHGTFTHKSFIEDISQVIQTKGHVHLQEQLLSDVLNTKMEIHSVEMGKNKIREKLCGKKLLIVLDDTKYDPLLNLRDSHVWFAKGTVIIITAREEHLLRIPQNGSAFPVNLLSTNESLELLSWHAFREAKPKQEYNDLAKRVVVYCGGLPLALEVIGSSLFERTKEEWKSVLLELKEIPEHDVHRKLKISFNGLRNEMEKDLFLDVCCFFVGKGRTFVTKILNDCGVDADSGLRILIERSLVQVKKNKKLGMQQLLQKMGRKIICEISRKELGKNPPLWSGQDAEYERLENTLFSSQQTKVIQKRLSLKMFLIATREFERYPSGVRDTSRLLRLFKVFGKLRWISLQGFSSEYLPKDIYLHDAMAIDLKHSLLRFVWKEPQVLSWLKVLNLSHSMYLRETPDFSGLPRLEQLVLKDCPSLHKVHHSIGCLNNLLLLNLKDCTSLSNLPREL 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00534 689 Gene3D - 186 341 IPR027417 -
Viun10g00534 689 SMART till_3 20 160 IPR000157 GO:0007165
Viun10g00534 689 SUPERFAMILY L domain-like 570 686 - -
Viun10g00534 689 Gene3D - 18 185 IPR035897 -
Viun10g00534 689 Gene3D Ribonuclease Inhibitor 527 689 IPR032675 -
Viun10g00534 689 Pfam TIR domain 20 182 IPR000157 GO:0007165
Viun10g00534 689 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Viun10g00534 689 SUPERFAMILY "Winged helix" DNA-binding domain 421 506 IPR036390 -
Viun10g00534 689 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Viun10g00534 689 Gene3D - 349 433 IPR042197 -
Viun10g00534 689 PRINTS Disease resistance protein signature 292 306 - -
Viun10g00534 689 PRINTS Disease resistance protein signature 217 232 - -
Viun10g00534 689 PRINTS Disease resistance protein signature 384 398 - -
Viun10g00534 689 PRINTS Disease resistance protein signature 666 682 - -
Viun10g00534 689 Pfam NB-ARC domain 201 417 IPR002182 GO:0043531
Viun10g00534 689 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 688 IPR044974 GO:0006952
Viun10g00534 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 443 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00534 Viun-Chr10 4710513 4713567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00534 195 686 WRKY Transcription Factor Family AT5G45050 28.161 7.91e-55 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00534 - - vra:106773334 908.286