Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00532 ATGGCATGTCCAGGTGGAGCCACACACTCACCAAAGCAGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGTTGGATTACAATCCCGCTTGAACGATGTGATTCAAATTATAAAAGATAAATCCAGGGAAGTTTGTATAATAGGAATATGGGGTGAGGGAGGTTCGGGGAAAACCACCCTTGCCAAAGCTATCTACAATCAACTTCATGGTACATTCACACATAAAAGTTTTATTGAAGATATTTCACAAGTTATTCAAACAAAAGGGCATGTTCATTTACAAGAACAACTACTTTCAGATGTCCTAAACACAAAGATGGAGATACACAGCGTTGAGATGGGAAAAAATAAGATTCGGGAAAAACTTTGTGGGAAAAAATTGCTCATCGTACTTGACGATACCAAATACGATCCATTATTAAACCTACGCGATAGTCATGTATGGTTCGCTAAAGGAACTGTCATAATAATTACAGCAAGAGAAGAACACCTACTAAGGATACCTCAAAATGGTTCTGCTTTTCCAGTAAATCTGTTGAGCACAAATGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAACAAGAATACAATGACCTTGCAAAAAGAGTAGTTGTTTATTGTGGAGGACTACCTCTTGCTCTTGAAGTCATTGGAAGTAGTTTATTTGAAAGGACTAAAGAAGAATGGAAGAGTGTATTGTTAGAATTAAAGGAAATTCCTGAGCATGATGTCCATCGGAAATTGAAAATAAGCTTCAATGGTTTACGCAATGAAATGGAAAAAGATTTATTCCTTGATGTTTGTTGTTTCTTTGTTGGTAAAGGCAGAACCTTTGTTACAAAGATCCTAAATGACTGTGGAGTAGATGCTGATAGTGGACTAAGAATTCTCATTGAGCGTAGCCTCGTACAAGTTAAAAAGAACAAGAAATTAGGAATGCAACAGTTGCTACAAAAAATGGGAAGAAAAATTATTTGTGAAATTTCAAGAAAGGAACTTGGAAAGAACCCTCCACTATGGTCTGGTCAGGATGCAGAATATGAACGATTAGAGAATACTCTCTTCTCATCACAACAGACAAAAGTCATTCAGAAAAGATTGTCTTTGAAAATGTTTTTAATTGCCACAAGAGAGTTCGAACGTTATCCTTCAGGGGTAAGAGACACATCAAGGCTTCTGAGACTCTTCAAAGTTTTTGGGAAACTGAGATGGATCAGTTTGCAAGGGTTTTCTTCAGAATACCTACCTAAAGACATTTATCTGCATGATGCAATGGCGATTGATTTAAAACACAGTCTTCTTCGATTCGTCTGGAAAGAACCTCAGGTTTTGAGTTGGCTAAAAGTCCTTAATCTTAGTCACTCCATGTACTTGAGAGAAACTCCTGACTTTTCTGGACTACCACGTCTTGAACAACTCGTTCTCAAAGATTGTCCAAGCTTGCACAAAGTACACCATTCTATTGGATGTCTCAACAATCTTTTATTGCTAAATTTGAAAGATTGTACAAGTCTAAGCAATCTCCCAAGAGAGGTATATAAGTTGAAATCTTTAAACACTCTCATTCTCTCTGGTTGTTCGAAGATTGACCTATTGGAAAAATATATAGTGCAAGTGGAATCCTTGTTAATTCTAATTGCTGAAAATGCAGCTGTGAAACAAGTGCCCTTTTCAATTGTAAGCTCAAAAAACATTGGATATATATTTCTACGTGGATGTGAGGGATTGTCATGTAATCTTTTTCCTTCTATCATTCGGTCTTGGATATCACCAATAATGAATCCCTTATCTTATGTTCACTCATTTTGCATGGATATTGAGGATAATGGTTGGAATGATTTTGACCCATTGCTTAGCACCCTTGCAAATCTTCGAAGTGTTTTGGTACAATGTGACACTGAGTTTCAATTATCTAAGCTTGTTGAAACTATTCTGATCGAATATGGAGTAAATATTTCAAAATCAGAAATTTCACAGCAGCACTTCAAGTATTCTTTGATTGGTGTTGGAAGATGCAAGGATTTCTTCAATGCTGTCAGTGATATCATTTCTAAGGTATTTGCAAGCAATGAGTCACGCGATGTTTCTCTCCCAGGTGATAATGATCCTTATTGGTTCGGCCACATGGGTGAGGGTCGTTCTGTTTTTTTCACCGTGCCTCGAGATCATGACTTGAAGGGAATGGCTTTGTGTGTTGTTTATTTATCAACACCTGAAATTGTGGCCCCTGTATGCCTTAGAAGTGTCTTAATTGTTAATTACACAAAGTGCACATTGCAGATACACAACCATGGCAGGGTAATTTCCTTTAATGATATAGATTGGCAAGGTATAATATCAAATTTAGGACCAGGAGACAAGGTGGAGATTTGTGTGACTTTTGCTCAAGAATTGGTAGTCACGAACACAATTCTCTATCTGATATGTGATGAATTAAATGACTTACAAAAGGAGCCTGCGCCAAAGAAAAATTCCCTCATTAGATTTGTAAAGAAAGTTGTAATGTGA 2529 0.3709 MACPGGATHSPKQQISLDGMRAITVGLQSRLNDVIQIIKDKSREVCIIGIWGEGGSGKTTLAKAIYNQLHGTFTHKSFIEDISQVIQTKGHVHLQEQLLSDVLNTKMEIHSVEMGKNKIREKLCGKKLLIVLDDTKYDPLLNLRDSHVWFAKGTVIIITAREEHLLRIPQNGSAFPVNLLSTNESLELLSWHAFREAKPKQEYNDLAKRVVVYCGGLPLALEVIGSSLFERTKEEWKSVLLELKEIPEHDVHRKLKISFNGLRNEMEKDLFLDVCCFFVGKGRTFVTKILNDCGVDADSGLRILIERSLVQVKKNKKLGMQQLLQKMGRKIICEISRKELGKNPPLWSGQDAEYERLENTLFSSQQTKVIQKRLSLKMFLIATREFERYPSGVRDTSRLLRLFKVFGKLRWISLQGFSSEYLPKDIYLHDAMAIDLKHSLLRFVWKEPQVLSWLKVLNLSHSMYLRETPDFSGLPRLEQLVLKDCPSLHKVHHSIGCLNNLLLLNLKDCTSLSNLPREVYKLKSLNTLILSGCSKIDLLEKYIVQVESLLILIAENAAVKQVPFSIVSSKNIGYIFLRGCEGLSCNLFPSIIRSWISPIMNPLSYVHSFCMDIEDNGWNDFDPLLSTLANLRSVLVQCDTEFQLSKLVETILIEYGVNISKSEISQQHFKYSLIGVGRCKDFFNAVSDIISKVFASNESRDVSLPGDNDPYWFGHMGEGRSVFFTVPRDHDLKGMALCVVYLSTPEIVAPVCLRSVLIVNYTKCTLQIHNHGRVISFNDIDWQGIISNLGPGDKVEICVTFAQELVVTNTILYLICDELNDLQKEPAPKKNSLIRFVKKVVM 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00532 842 PRINTS Disease resistance protein signature 520 536 - -
Viun10g00532 842 PRINTS Disease resistance protein signature 47 62 - -
Viun10g00532 842 PRINTS Disease resistance protein signature 214 228 - -
Viun10g00532 842 PRINTS Disease resistance protein signature 122 136 - -
Viun10g00532 842 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 555 IPR044974 GO:0006952
Viun10g00532 842 Pfam NB-ARC domain 31 247 IPR002182 GO:0043531
Viun10g00532 842 SUPERFAMILY L domain-like 400 633 - -
Viun10g00532 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 273 IPR027417 -
Viun10g00532 842 Gene3D - 11 171 IPR027417 -
Viun10g00532 842 Gene3D - 179 263 IPR042197 -
Viun10g00532 842 Gene3D Ribonuclease Inhibitor 385 552 IPR032675 -
Viun10g00532 842 SUPERFAMILY "Winged helix" DNA-binding domain 251 336 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00532 Viun-Chr10 4709358 4713088 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00532 452 631 WRKY Transcription Factor Family AT5G45050 31.111 2.08e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00532 - - vun:114165123 1000.73