Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00531 ATGGCGTCTTCAATTCCTCCCACAGAATTCGCCTCTTCAACTTCCAAACTCCCACGGAAGTACGATGTGCTCATCAACTTCACAGGAGAAGACATCCGCAGGAAATTTGTTTCTCATCTCGATTATGCTCTCTCTACTGTTGGGCTCACTACTTTCCTTCATGAGGAGAATGCAGTGAATGACATGCACATCCAACAACCTATTCTCAATCTGTGTCGGGTAGCAATTGTTGTTTTCACCAAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTCCAACAAATCATCAAATGGCAAGAAACTTATTCCCGACATGTTTTTCCTGTATATTACGAAATTCAGCCATCCGATGTACGTCTTCAGAAGGGTGATTTTGGAGAAACATTCAAAGAAACTGCACAACAAACATTTTCAGCACAACAACTAGAGCATGGCATGTCCAGGTGGAGCCACACACTCACCAAAGCAGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTTGTGGACAAAATTGTTGAGGGCGTTCTTAATTTACCAGTCTTGTTTGCTACTAAATTTCCAGTTGGATTACAATCCCGCTTGAACGATGTGATTCAAATTATAAAAGATAAATCCAGGGAAGTTTGTATAATAGGAATATGGGGTGAGGGAGGTTCGGGGAAAACCACCCTTGCCAAAGCTATCTACAATCAACTTCATGGTACATTCACACATAAAAGTTTTATTGAAGATATTTCACAAGTTATTCAAACAAAAGGGCATGTTCATTTACAAGAACAACTACTTTCAGATGTCCTAAACACAAAGATGGAGATACACAGCGTTGAGATGGGAAAAAATAAGATTCGGGAAAAACTTTGTGGGAAAAAATTGCTCATCGTACTTGACGATACCAAATACGATCCATTATTAAACCTACGCGATAGTCATGTATGGTTCGCTAAAGGAACTGTCATAATAATTACAGCAAGAGAAGAACACCTACTAAGGATACCTCAAAATGGTTCTGCTTTTCCAGTAAATCTGTTGAGCACAAATGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAACAAGAATACAATGACCTTGCAAAAAGAGTAGTTGTTTATTGTGGAGGACTACCTCTTGCTCTTGAAGTCATTGGAAGTAGTTTATTTGAAAGGACTAAAGAAGAATGGAAGAGTGTATTGTTAGAATTAAAGGAAATTCCTGAGCATGATGTCCATCGGAAATTGAAAATAAGCTTCAATGGTTTACGCAATGAAATGGAAAAAGATTTATTCCTTGATGTTTGTTGTTTCTTTGTTGGTAAAGGCAGAACCTTTGTTACAAAGATCCTAAATGACTGTGGAGTAGATGCTGATAGTGGACTAAGAATTCTCATTGAGCGTAGCCTCGTACAAGTTAAAAAGAACAAGAAATTAGGAATGCAACAGTTGCTACAAAAAATGGGAAGAAAAATTATTTGTGAAATTTCAAGAAAGGAACTTGGAAAGAACCCTCCACTATGGTCTGGTCAGGATGCAGAATATGAACGATTAGAGAATACTCTCTTCTCATCACAACAGACAAAAGTCATTCAGAAAAGATTGTCTTTGAAAATGTTTTTAATTGCCACAAGAGAGTTCGAACGTTATCCTTCAGGGGTAAGAGACACATCAAGGCTTCTGAGACTCTTCAAAGTTTTTGGGAAACTGAGATGGATCAGTTTGCAAGGGTTTTCTTCAGAATACCTACCTAAAGACATTTATCTGCATGATGCAATGGCGATTGATTTAAAACACAGTCTTCTTCGATTCGTCTGGAAAGAACCTCAGGTTTTGAGTTGGCTAAAAGTCCTTAATCTTAGTCACTCCATGTACTTGAGAGAAACTCCTGACTTTTCTGGACTACCACGTCTTGAACAACTCGTTCTCAAAGATTGTCCAAGCTTGCACAAAGTACACCATTCTATTGGATGTCTCAACAATCTTTTATTGCTAAATTTGAAAGATTGTACAAGTCTAAGCAATCTCCCAAGAGAGGTATATAAGTTGAAATCTTTAAACACTCTCATTCTCTCTGGTTGTTCGAAGATTGACCTATTGGAAAAATATATAGTGCAAGTGGAATCCTTGTTAATTCTAATTGCTGAAAATGCAGCTGTGAAACAAGTGCCCTTTTCAATTGTAAGCTCAAAAAACATTGGATATATATTTCTACGTGGATGTGAGGGATTGTCATGTAATCTTTTTCCTTCTATCATTCGGTCTTGGATATCACCAATAATGAATCCCTTATCTTATGTTCACTCATTTTGCATGGATATTGAGGATAATGGTTGGAATGATTTTGACCCATTGCTTAGCACCCTTGCAAATCTTCGAAGTGTTTTGGTACAATGTGACACTGAGTTTCAATTATCTAAGCTTGTTGAAACTATTCTGATCGAATATGGAGTAAATATTTCAAAATCAGAAATTTCACAGCAGCACTTCAAGTATTCTTTGATTGGTGTTGGAAGATGCAAGGATTTCTTCAATGCTGTCAGTGATATCATTTCTAAGGTATTTGCAAGCAATGAGTCACGCGATGTTTCTCTCCCAGGTGATAATGATCCTTATTGGTTCGGCCACATGGGTGAGGGTCGTTCTGTTTTTTTCACCGTGCCTCGAGATCATGACTTGAAGGGAATGGCTTTGTGTGTTGTTTATTTATCAACACCTGAAATTGTGGCCCCTGTATGCCTTAGAAGTGTCTTAATTGTTAATTACACAAAGTGCACATTGCAGATACACAACCATGGCAGGGTAATTTCCTTTAATGATATAGATTGGCAAGGTATAATATCAAATTTAGGACCAGGAGACAAGGTGGAGATTTGTGTGACTTTTGCTCAAGAATTGGTAGTCACGAACACAATTCTCTATCTGATATGTGATGAATTAAATGACTTACAAAAGGAGCCTGCGCCAAAGAAAAATTCCCTCATTAGATTTGTAAAGAAAGTTGTAATGTGA 3039 0.3784 MASSIPPTEFASSTSKLPRKYDVLINFTGEDIRRKFVSHLDYALSTVGLTTFLHEENAVNDMHIQQPILNLCRVAIVVFTKTYSQSAWCLHQLQQIIKWQETYSRHVFPVYYEIQPSDVRLQKGDFGETFKETAQQTFSAQQLEHGMSRWSHTLTKAANFFGWDESNYRSDAELVDKIVEGVLNLPVLFATKFPVGLQSRLNDVIQIIKDKSREVCIIGIWGEGGSGKTTLAKAIYNQLHGTFTHKSFIEDISQVIQTKGHVHLQEQLLSDVLNTKMEIHSVEMGKNKIREKLCGKKLLIVLDDTKYDPLLNLRDSHVWFAKGTVIIITAREEHLLRIPQNGSAFPVNLLSTNESLELLSWHAFREAKPKQEYNDLAKRVVVYCGGLPLALEVIGSSLFERTKEEWKSVLLELKEIPEHDVHRKLKISFNGLRNEMEKDLFLDVCCFFVGKGRTFVTKILNDCGVDADSGLRILIERSLVQVKKNKKLGMQQLLQKMGRKIICEISRKELGKNPPLWSGQDAEYERLENTLFSSQQTKVIQKRLSLKMFLIATREFERYPSGVRDTSRLLRLFKVFGKLRWISLQGFSSEYLPKDIYLHDAMAIDLKHSLLRFVWKEPQVLSWLKVLNLSHSMYLRETPDFSGLPRLEQLVLKDCPSLHKVHHSIGCLNNLLLLNLKDCTSLSNLPREVYKLKSLNTLILSGCSKIDLLEKYIVQVESLLILIAENAAVKQVPFSIVSSKNIGYIFLRGCEGLSCNLFPSIIRSWISPIMNPLSYVHSFCMDIEDNGWNDFDPLLSTLANLRSVLVQCDTEFQLSKLVETILIEYGVNISKSEISQQHFKYSLIGVGRCKDFFNAVSDIISKVFASNESRDVSLPGDNDPYWFGHMGEGRSVFFTVPRDHDLKGMALCVVYLSTPEIVAPVCLRSVLIVNYTKCTLQIHNHGRVISFNDIDWQGIISNLGPGDKVEICVTFAQELVVTNTILYLICDELNDLQKEPAPKKNSLIRFVKKVVM 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00531 1012 Gene3D Ribonuclease Inhibitor 567 731 IPR032675 -
Viun10g00531 1012 SMART till_3 20 160 IPR000157 GO:0007165
Viun10g00531 1012 PRINTS Disease resistance protein signature 217 232 - -
Viun10g00531 1012 PRINTS Disease resistance protein signature 690 706 - -
Viun10g00531 1012 PRINTS Disease resistance protein signature 384 398 - -
Viun10g00531 1012 PRINTS Disease resistance protein signature 292 306 - -
Viun10g00531 1012 Pfam TIR domain 20 182 IPR000157 GO:0007165
Viun10g00531 1012 Gene3D - 184 341 IPR027417 -
Viun10g00531 1012 Gene3D - 18 183 IPR035897 -
Viun10g00531 1012 SUPERFAMILY "Winged helix" DNA-binding domain 421 506 IPR036390 -
Viun10g00531 1012 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Viun10g00531 1012 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Viun10g00531 1012 Gene3D - 349 433 IPR042197 -
Viun10g00531 1012 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 727 IPR044974 GO:0006952
Viun10g00531 1012 SUPERFAMILY L domain-like 570 803 - -
Viun10g00531 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 443 IPR027417 -
Viun10g00531 1012 Pfam NB-ARC domain 201 417 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00531 Viun-Chr10 4709358 4713548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00531 6 763 WRKY Transcription Factor Family AT4G12020 25.647 3.69e-56 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00531 - - vun:114165123 1307.74