Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00526 ATGGCGTCTTCAATTCCTCCCACAGAATTCGCCTCTTCAACTTCCAAACTCCCACGGAAGTACGATGTGCTCATCAACTTCACAGGAGAAGACATCCGCAGGAAATTTGTTTCTCATCTCGATTATGCTCTCTCTACTGTTGGGCTCACTACTTTCCTTCATGAGGAGAATGCAGTGAATGACATGCACATCCAACAACCTATTCTCAATCTGTGTCGGGTAGCAATAGTTGTTTTCACCAAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTCCAACAAATCATCAAATGGCAAGAAACTTATTCCCGACATGTTTTTCCTGTATATTACGAAATTCAGCCATCCGATGTACGTTTTCAGAAGGGTGATTTTGGAGAAACATTCAAAGCAACTGCACAAAAAACATTTTCAGGACAACAACTGGAGCATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGCAGCAAATTTATTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTTGTGGACAAAATTGTTAAGGGCGTTCTTAATTTACCAGTCTTCTCTGCTACTAAATTTCCAGTTGGATTACAATCCTGCGTGAAAGATGTGATTCAAATTATAAAAAATAAATCCAGGGAAGTTTGTATAATAGGAATATGGGGAGAGGGAGGATCGGGTAAAACCACCCTTGCCAAAGCTATCTACCATCAACTTCATGGTACATTCACACAGAAAAGTTTTATTGAAGATATTGCACAAGTTATTCAAACAAGAGGGCATGTTCATTTACAAGAACAACTACTTTCGGATGTCCTAAACACAAAGATGGAGATACGCAGCGTTGAGATGGGAAAAAAAATGATTCGGGTAAAACTTTCCGGGAAAAAATTGCTCATCGTACTTGACAATACTAAATACGATCCATTATTAGACCTATACGATAGTCATGTTTGGTTCGCTAAAGGAACTGTCATACTAATTACAGCAAGAGAAGAACACCTACTAAGGATACATCAAGTTGATTCTATTTTCCGGATGAATCTGTTGAGCACAAATGAGTCCCTTGAGCTTCTTAGTTGGCATGCATTTAGAGAAGAAAAACCAAAAGAAGAATACAATGACCTTGCAAAAAGAGTAGTTGTTTATTGTGGAGGACTACCGCTAGTTCTTGAAGTCATTGGAAGTTGTTTGTATGAAAGGACGAAAGAAGAATGGAATAGATTATTGTTACAATTAGACAAAAGTCCCCAACATGAAGTTTCACAGACATTGAAAATAAGCTACGAAGGTTTACTTAATCAAACGGAAAAAGATTTATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAAGGCAGAACCTTTGTTACAAAGATTCTAAATGATTGTGGAGTAGATGCTGATAGTGGAATAAGAATTCTCATTGAGCGTAACCTCATACAAGTAAAAAAGAATAACAAATTAGGAATGCAACCGTTGCTACAAAAAATGGGAAGAAAAATTATTCGTGAAATTTCAGGAAAGGAACTTGGAAAGAACGCTCGACTATGGTTTGGTCAGGATGCAGAAAATGATCTGTTAGAGAACACTCTCTTCTCATCACAGCAGACAAAAGTCATTCAGAGATTGTCTTTGAAAATGTTTTTAATAGCCACAAGAGAGTTATTGGAACGTTATCCTTCAATGGTAAGAGACACATCAAGGCTTCTGAGACTCAGTAGAGATTTTGGTAAATTGAGATGGATCAGTTTGCATGGGTTTTCTTCAGAAAACCTACCTAAAGACATTTATCTGCATGATGCAATAGCGATTGATTTAAAAAACAGTTTTCTCCGATTCGTCTGGAAAGAACCTCAGGTTTTGAGGTCGCTAAGAGTCCTTAATCTTAGTCACTCCATGTACTTGAGAGAAACTCCTGACTTTTCCGGACTACCACGTCTTGAACAGCTCATTCTCAAAGATTGTCCAAGCTTGCGTAAAGTACACCATTCTATTGGATGTCTCAACAATCTTGTATTGCTAAATTTGAAGGACTGTACAAGTCTAAGCAATCTCCCAAGAGAGTTATACAAGTTAAAATCATTAAACACTCTCATTCTCTCTGGTTGTTCGAAGATCGACCTATTGGAAAAATATATAGTGCAAATGGAGTCCTTGATAATTCTAATTGCTGAAAATGCAGCTGTGAAACAAGTGCCCATTTCAATTGTAAGCTCAAAAAACATTGGATATATATTTCTACGTGGATGTGAGGGATTTTCATTTAATCTTTTTCCTTCTATCATTCGGTCTTGGATATCACCAATAATGAATCCCTTATCTTATATTCACTCAATTTGCATGGATATTGAGGATAATGGTTGGAATGATTTTGCACCATTGCTTAGCACCCTCGCAAATCTTCGAAGTGTTTCGGTACAATGTGACACCGAGTTTCAATTATCTAAGCTTGTTGAAACTATTCTGATCGAATATGGAGTAAATATTTCAAAATCAGAAATTTCACAGCAGCACTTCAAGTATTCTTTGATTGGTGTTGGAAGATGCAAGGATTTCTTCAATGCTGTCAGTGATATCATTTCTAAGGTATTTGCAAGCAATGAGTCACGCGATGTTTCTCTCCCAGGTGATAATGATCCTTATTGGTTCGGCCACATGGGTGAGGGTCGTTCTGTTTTTTTCACCGTGCCTCGAGATCATGACTTGAAGGGAATGGCTTTGTGTGTTTTTTATTTATCAACACCTGAAATTGTGGCCCCTGTATGCCTTAGAAGTGTCTTAATTGTTAATTACACAAAGTGCACATTTCAGATACACAACCATGGAACGGTAATTTCCTTTAATGATATAGATTGGCAAGGTATAATATCAAATTTAGAATCAGGAGACAAGGTGGAGATTTGTGTGACTTCTGCTCATGAATTGGTAGTCAAGAACACAATTGTCTATCTGATATGTGATGAATTAAATGACTTACAAAAGGAGCCTGCGCCAAAGAAAAATTCCCTCGTTAGATTTGTAAAGAAAGTTGTAATGTGA 3039 0.3764 MASSIPPTEFASSTSKLPRKYDVLINFTGEDIRRKFVSHLDYALSTVGLTTFLHEENAVNDMHIQQPILNLCRVAIVVFTKTYSQSAWCLHQLQQIIKWQETYSRHVFPVYYEIQPSDVRFQKGDFGETFKATAQKTFSGQQLEHGMSRWSHALTKAANLFGWDESNYRSDAELVDKIVKGVLNLPVFSATKFPVGLQSCVKDVIQIIKNKSREVCIIGIWGEGGSGKTTLAKAIYHQLHGTFTQKSFIEDIAQVIQTRGHVHLQEQLLSDVLNTKMEIRSVEMGKKMIRVKLSGKKLLIVLDNTKYDPLLDLYDSHVWFAKGTVILITAREEHLLRIHQVDSIFRMNLLSTNESLELLSWHAFREEKPKEEYNDLAKRVVVYCGGLPLVLEVIGSCLYERTKEEWNRLLLQLDKSPQHEVSQTLKISYEGLLNQTEKDLFLDVCCFFVGKGRTFVTKILNDCGVDADSGIRILIERNLIQVKKNNKLGMQPLLQKMGRKIIREISGKELGKNARLWFGQDAENDLLENTLFSSQQTKVIQRLSLKMFLIATRELLERYPSMVRDTSRLLRLSRDFGKLRWISLHGFSSENLPKDIYLHDAIAIDLKNSFLRFVWKEPQVLRSLRVLNLSHSMYLRETPDFSGLPRLEQLILKDCPSLRKVHHSIGCLNNLVLLNLKDCTSLSNLPRELYKLKSLNTLILSGCSKIDLLEKYIVQMESLIILIAENAAVKQVPISIVSSKNIGYIFLRGCEGFSFNLFPSIIRSWISPIMNPLSYIHSICMDIEDNGWNDFAPLLSTLANLRSVSVQCDTEFQLSKLVETILIEYGVNISKSEISQQHFKYSLIGVGRCKDFFNAVSDIISKVFASNESRDVSLPGDNDPYWFGHMGEGRSVFFTVPRDHDLKGMALCVFYLSTPEIVAPVCLRSVLIVNYTKCTFQIHNHGTVISFNDIDWQGIISNLESGDKVEICVTSAHELVVKNTIVYLICDELNDLQKEPAPKKNSLVRFVKKVVM 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00526 1012 Gene3D - 186 344 IPR027417 -
Viun10g00526 1012 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 725 IPR044974 GO:0006952
Viun10g00526 1012 SUPERFAMILY "Winged helix" DNA-binding domain 420 522 IPR036390 -
Viun10g00526 1012 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Viun10g00526 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 443 IPR027417 -
Viun10g00526 1012 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Viun10g00526 1012 Gene3D - 349 432 IPR042197 -
Viun10g00526 1012 Gene3D - 18 185 IPR035897 -
Viun10g00526 1012 Pfam NB-ARC domain 201 429 IPR002182 GO:0043531
Viun10g00526 1012 PRINTS Disease resistance protein signature 217 232 - -
Viun10g00526 1012 PRINTS Disease resistance protein signature 384 398 - -
Viun10g00526 1012 PRINTS Disease resistance protein signature 690 706 - -
Viun10g00526 1012 PRINTS Disease resistance protein signature 292 306 - -
Viun10g00526 1012 Gene3D Ribonuclease Inhibitor 567 728 IPR032675 -
Viun10g00526 1012 SUPERFAMILY L domain-like 571 804 - -
Viun10g00526 1012 Pfam TIR domain 20 182 IPR000157 GO:0007165
Viun10g00526 1012 SMART till_3 20 160 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00526 Viun-Chr10 4673722 4677652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00526 6 763 WRKY Transcription Factor Family AT4G12020 26.650 8.18e-65 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00526 - - vun:114165123 1313.52